Gene detail

Detailed information of pred2_00062.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_00062.1	MYOTUBULARIN-RELATED	Sc3x4tf_164	805033	777440	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_00062.1

ATGGGTAACATACTGGAAATTGATACCCTCTCTGAGGACCTTGTGACACTTCAGGTTGAAAATGTTAAATGGTTGGATCGTGTCAATCCACGCAAGTCTTCAGAAGGTACTTTACACTTAACAGCAACACATCTTATCTTTGTGGATAATGCACAGAAAAAAGAAACATGGATCCTTCACATGTATATTGGCAATGTCGAAAAATTCCCCATTACTACTGGTGGCAGTCCTTTGCACATAAAATATAAGAATTTCATGGCCATCACATTTGTTATACCACGGGAAAGAGACTGCCAGGATGTTTACACTTCTTTACTCAAACTTTCCCAACCAGGGAGCCTCGATGAGTTGTATGCCTTCCAGTTTAAAGTTCAAGATAGCATGCCCCAAAATTACGGCTGGGAAATGTTCAACTTCCGTATGGAATATGATCGAATGGCTGTTCCGAACAGCAAATGGGTGCTTACAAGCATCAATAAAGAATATGAAATCTGTGATACTTACCCTCGGTACCTGTATGTCCCTGCAACAGCTACCACTCCAGTTTTAGTTGGCAGTTCTAAATTTCGGAGTAGAGGTCGTCTCCCTGTCTTGTCTTATTACCACAGAGATAATGAGGCTGCTATATGTCGTTGCAGCCAGCCATTGGCTGGTTTCAGTGCCCGTTGCTTAGAAGATGAACAAATGCTTAACGCTATCCTGAAATCAAATCCTAATTCTCCATTTATGTATGTCGTTGACACACGGCCAAAGATCAATGCTGTTGCCAACAAAGCTGCTGGGAAAGGTTATGAGAGGGAGAGCTTTTACTCCAACATCAAATTCCAGTTCTTGGGCATTGAAAATATTCATGTCATGCGTAGCAGCTTGCAAAAGCTTCTTGAAGTGTGCGAGTTGAAGAATCCCTCCATGTCGGCATTCCTATCAGGTCTGGAGAACAGTGGCTGGTTAAAACATGTCCGTGCTGTCATGGAAACCTCTACCTTCATTGCCAGGGCTGTGTCCGAGGGAGTAAGTGTCCTTGTTCATTGTTCAGATGGTTGGGACCGTACTGCCCAAACCTGTTCTCTGGCTGGTCTTATGTTAGATCCCTATTACAGAACGTTAAAAGGATTTCAGGATCTCATTGAAAAAGAGTGGTTAGCATTTGGTCATAAATTCACCGATCGCTGCGGCTTTCTGGGAAGTGTGGAGTCGAAAGAAATCTCTCCAGTCTTCACCCAATTCATTGACTGTGTTTGGCAAATGACACAACAGTATCCGTGCGCTTTTCAGTTCAATGAACGATTTTTGTTGACCTTACATGATCACGTCTATTCTTGCCAATATGGTACCTTTATTGGAAACTGTGAAAAAGACAGAATTGACCTCAGGTTGGTAGAAAGGACCTATTCACTTTGGGGATACGTTCATAAATACATGAATGATTTTATTAACCCAATTTATCTTAAGGAAAACATGGCTACCAAACGTTCGGGACTTTTGTTCCCCAATACATCTCCTCAAGTTTTCAGGTTCTGGAAAGGCATGTACAATCGTTTTGATTCTGGCGTTCATCCTAGAGAAGAAATCATGGATACTTTGGCTTCGGGCAAAGAGCATAGCAGTTCTCTTGAAGACCATATACGACTTCTTGAAATGCGTATCAACGACTTGTGCAAACGCATGGGCATTTCCGAGGATGTCATTCAACGTAAACTCCAAGGGTTTCTCTCCATGGATTCATTGGATGGTGTCTTATTAGCTGAACCGAACGAGGAAAATTGTGGGGAAAGATTAACAAGCACCAGTCTTCCACTCACAAAATCCTTTGATTCCGATAACAAAAAAAGTGATACAGAATCCGGCTTTGACGAATCTAGCTCACAGCTCTCTCGCTCAGGGATTGAAGATGGTTTGGGCTCCAGTACGATTTCTTTAACTGGCGTCCTCGGAAATTCTGAGCCACTGACGAGAGCTCAATTTCAAGCTGAACTCTCATCCGTCGCAGTCGATTGGAAACCGTTACGAAATGTCCAAAATTGTAGTTGTGCATATTCCTTTGAACATTTCTCCAAAAAGTACCATTGTTGGAAATGTGGTGAAGTTTTCTGTACCCGCTGCATTGCAGCTCATCTGCCACTCCCCGGACACTTTCCAAAACGTCACGCCCCCGTCTGTGAGTCGTGCTACACTCACCTGCATTCAGTCTCACCTATCCATGAAATGGCATCGCAAGTCGCCAGT

Transcript

pred2_00062.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan
PF06602	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan
PF21098	PH-GRAM_MTMR6-like	GRAM domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR010569	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR030564	Family	Myotubularin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10807	MYOTUBULARIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004438	Molecular Function	phosphatidylinositol-3-phosphate phosphatase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0046856	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0106018	Molecular Function	phosphatidylinositol-3,5-bisphosphate phosphatase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-