Gene detail

Detailed information of pred2_00039.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_00039.1	ATP-DEPENDENT RNA HELICASE	Sc3x4tf_980	282710	303569	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_00039.1

ATGGGACGCCCTGTAGAATTGACTTTTGATGAAAGAACCCTGCTGAGACGATTGGAAAACGGCTTACGCGGTGTGTCTCATGTTATCGTGGATGAAATTCACGAAAGAGATATCAACACTGATTTCCTTTTGGTATTATTACGGGATATGTTGGCAGCTTACAGTGAACTACGTGTCGTGCTCATGTCCGCCACGGTAGATGTAAGCCTATTCTGTGAATACTTTGGAAATTGTAATGTTGTCGAGGTTTATGGACGCGTTTACCCAGTTCAAGACTACTTTCTAGAAGACTGCATTCAAATGACCAACTTTGTTCCGCCTCCATCTGATAGAAAGAAGAAGAAGGAGAAGGACGATGACGGAGAGGACAATGAAAAAGAAGAAAACTGCAATTTAATGGTGTCGGGAGATTATTCAGAAGCTACAAGAAGAGCAATGGCAATGTTAAACGAGAAGGAAATGTCCTTCGAGTTGATTGAGNNTCTTTCAGGTTCTCAAAGGTACCGAATTCTTCCGCTTCACTCTCAGATCCCCAGAGAAGATCAAAAGAAAGTCTTTGAGCCTGTTCCTAACGGAATTGTAAAGATCATTTTGTCTACAAATATTGCTGAAACCAGCGTGACCATCAATGATGTTGTGTATGTAGTTGACTGTTGCAAAGCTAAAATGAAATTGTTTACATCGCACAACAATATGACAAATTATGCTACCCTATGGGCATCAAAGACTAACTTGGAACAAAGACGTGGACGCGCTGGTCGTGTCAGGCCGGGATTCTGTTTTCATCTCTGTAGCAGAGCGAGATATGAGAGGCTGGAACAACATACCACCCCAGAGATTTTCCGTACCCCATTGCATGAGTTAGCCCTTGCTATTAAGCTGTTACGGCTGGGATCAATCGGGCGGTTCCTGGCCAAAGCTGTTGAACCGCCTCCCATTGATGCTGTCATAGAAGCTGAAGCCCTTCTTAAAGAAATGCGTGCTCTGGATGCAAATGATGAATTAACACCTCTGGGTCGTATCTTGGCTAGACTTCCCATTGAGCCTCGCCTTGGAAAGATGATGATTTACGGATGCCTGTTTTATTGTGGAGATGCTGTATGCACAGTTGCGGCCAGCACCACATTTCCTGAGCCCTTTATCACACATGACCGTAAACGTCTTGGTTGGGTGCACAAGAATTTGGCAGGTACCAGATCCAGTGACCACGTGGCGCTACTAAATGCATTCCAAATGTGGGAAGACGCCAGAATGTCTGGTGAAGACAGTGAAGCTTGTTTCTGTGACAATAAATCCTTATCCATGCCCACGCTTCGGATGACATGTGAAGCAAAGAACCAACTGAGAGACATCCTCACCAATGCAGGTTTTCCAGATGAAAGTATGCTGCCCAAAGTTTACAATTATACGGGTCCTGATGGCAGTCTCGATATTGTGACCACTCTTCTTTGCATGGGTCTCTATCCCAACGTCTGTTACCATAAAGAGAAACGTAAAGTACTGACAACAGAGAGTAAACATGCACTCGTACACAAGTCGTCCGTGAACTGCAGCAATTTTGAAATTCATTTCCCATCTCCATACTTTATTTTTGGTGAAAAGATCCGTACCCGTGCTGTGTCCTGTAAACAAATGACAATGGTTACTCCACTCCAGCTTTTGCTGTTTGCATCTCGGTCCGTCATGTACCACGATGGTCTGGTCATCTTGGATGATTGGATCAATCTAAAGATGGACCCAAATGTTGCTTCTAAAATCGTTGCATTGCGTCCAGCCATGGAAGCTCTGATTGTGCGTACAACTCAAGATCCTTCCGTGATTGCCCAGCCCAGCCAACAAGAATCTTCCCTAATGAATGGGGTCAGGCTCTTGTCTCAACCCAACGCAGGACGTTTTGGGATTGCTGACACAACTGAGTTCGGTGGAGGCGGCCGGGGATTCCGGAGTTTTAGCCGAGGAGGCAGCTTTGATGGTGGGTCCCGTGGCGGCTACGGCGGCAACTATGGCGGCGGCGGCGGTGGCGGTTACCGTGGAGGAATGGGTACTGGCTTCACCAACAACTGGAGAGGTGGCGGAGGCGGCGGAGGCTACAGGGGCGGCTACCGAGGAGGAAGTGGCGGCTTCAACAACAGAGGTGGCTACCGAGGAGGTGGCGGTGGCTACCGGGGTGGATAC

Transcript

pred2_00039.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050684	Biological Process	regulation of mRNA processing	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-