Detailed information of mRNA.BJAM.scaffold955.5979 in Bathynomus jamesi Gene info
Gene IDAnnotationContigStartEndStrand
mRNA.BJAM.scaffold955.5979PRE-MRNA PROCESSING PROTEIN PRP39-RELATEDscaffold955491303510573+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF135322OG-FeII_Oxy_22OG-Fe(II) oxygenase superfamilyDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan
IPR005123DomainOxoglutarate/iron-dependent dioxygenaseInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR027450DomainAlpha-ketoglutarate-dependent dioxygenase AlkB-likeInterproscan
IPR037151Homologous_superfamilyAlpha-ketoglutarate-dependent dioxygenase AlkB-like superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR17204PRE-MRNA PROCESSING PROTEIN PRP39-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000243Cellular Componentcommitment complexInterproscan
GO:0000395Biological ProcessmRNA 5'-splice site recognitionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0030627Molecular Functionpre-mRNA 5'-splice site bindingInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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TOP