Gene detail

Detailed information of mRNA.BJAM.scaffold640.4421 in Bathynomus jamesi Gene info

Gene ID	Annotation	Contig	Start	End	Strand
mRNA.BJAM.scaffold640.4421	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	scaffold640	622403	683445	+

Gene Structure

More details in Jbrowse Sequence

CDS

mRNA.BJAM.scaffold640.4421

ATGACAACTAAACATCCTGATTATGCTGTTCTTGCTGCAAGAATTGCAATATCTAATCTGCACAAGGAAACAAAGAAAACGTTTAGTGAAGTCATAGAAGATCTGTACAACCTGACCAATTCTCGAACGGGACTTAAGCAGCCAGTGATTTCTAACGAGCATTACAAGATCATTCAAACTAATTCTCAAAGACTTAACTCTTCTATTATATATGATCGGGATTTTTCGTATAATTATTTTGGTTTTAAGACTTTAGAGCGTTCTTATTTGCTTAAAATTGATGGCAAAGTGGTTGAGCGTCCGCAGCAGATGTTGATGCGAGTATCAGTTGGAATTCATGGTGAAGATATTGATGCTGCGATAGAAACCTACAACTTACTTTCAGAAAAGTGGTTTACGCACGCTTCTCCGACCTTATTTAACGCTGCAACGAGACGACCTCAGTTGTCAAGCTGTTTTCTGTTAACAATGAAAAGTGATAGCTTTGAAGGCATCTTTGACACACTTAGGCAGTGCGCTCTTATCTCAAAGTCTGCAGGAGGGATTGGTTTAAACATGCACTGTGTAAGAGGCGCTGGGTCACCCATTAGTGGTACAGATGACACCTCAGATGGGTTACTGCCAATCCTCCGCATTTTTAATGATACAGCTCGATACGTGGACCAAGGGGGAAACAAGAGGCCAGGTGCCTTCGCTATTTATTTGGAGCCTTGGCATACTGACATTTACTCATTTTTGCAGCTGAGAAAGAATACTGGAAATGAAGAGGAAAGAGTGAGAGATTTATTTTACGCTCTTTGGATTCCCGACTTGTTTATGGAGAGAGTTAGAGAGGATGCGGACTGGTCGCTTATGTGCCCACATCAGTCGCCAAACCTTGAAGAATGCTGGGGTGAAAACTTTGAGGAATTATATTGTAAATATGAAAGGGAAGGAAAATTTAAGAAGAAGGTAAAAGCACGTCATTTGTGGTACGCCATCATTGAAGCGCAGATTGAAACGGGAACCCCTTACATGTTATACAAAGACGCTTGTAATCGCAAGAGTAATCAGCAAAACCTTGGAACCATAAAATGCTCCAATCTTTGTACAGAAATAGTGGAGTACACATCTCCGGATGAAGTTGCCGTTTGTAACTTGGCATCGATTGCTGTTAACATGTTCGTGAAATCTGATAAAACATACGATTTTGAAAAGCTCAAATCTATCACAAAGGTCATAACTCGCAATTTAAACAAAATTATTGAAATAAACTATTATCCGCTGAAAGAAGCGGAAGTCTCGAATAAGCGCCACAGACCCATTGGTATTGGCATACAAGGATTGGCAGATGCATTTATTCTTATGAGGTACCCATTTGAATCGGAGGAAGCGAAGTTGTTAAACAAACATATTTTTGAAACCATTTACTACGGAGCAATGGAAGCAAGTTGCGAACTGGCTGAGAAGTTTGGTCCTTACGAGACTTATGAAGGATCCCCTGTCAGCAAAGGAATCTTTCAGTACGATATGTGGAACGTTACTCCGACGCCACTCCACGATTGGAGTTCTCTGAAAGAAAAAGTGGCTAAATTTGGAGTGAGAAACTCCCTCCTCATAGCCCCGATGCCGACCGCTTCCACCGCTCAAATCTTAGGCAATAACGAAAGCATTGAGGCCTACACGTCAAATATCTATTCCAGACGCGTTCTTTCAGGGGAATTTCAGGTTGTGAATCATCACTTGCTTCGAGACTTAACAGACCTCGGCATTTGGAATGACGATATGAAGAATGAGCTCATAGCCAGTAATGGTTCAGTGCAGGAAATATCTGATATCCCCGATGATTTGAAGAAGCTTTACAAGACAGTTTGGGAGATCTCTCAGAAAGTAGTTTTAGAAATGGCCGCGGACAGAGGCCCGTTTATTGACCAAAGTCAGTCACTGAACGTTCATATCGCTACTCCAAATTATGGAAAAATTACATCAATGCACTTGTACGGGTGGAAATTGGGTTTAAAAACTGGTATGTACTATCTTCGGACGAAGCCGGCCGCCAATGCCATTCAGTTCACAGTGGATAAAACAAAATTAAAACAAATTGAACAAAATGTTAAAGCCGTTGCCAATGGAGAGGGAGAGGAAAAGGAAGATGAAGTTGAAAGTCTCAGTGAGAACATGGCTGCCATGGTTTGTTCTCTCGAGAACAAAGACGAGTGTCTTATGTGTGGGTCGTGA

Transcript

mRNA.BJAM.scaffold640.4421

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00317	Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	Domain	Interproscan
PF02867	Ribonuc_red_lgC	Ribonucleotide reductase, barrel domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000788	Domain	Ribonucleotide reductase large subunit, C-terminal	Interproscan
IPR008926	Homologous_superfamily	Ribonucleotide reductase R1 subunit, N-terminal	Interproscan
IPR013346	Domain	Ribonucleotide reductase, class I, alpha subunit, C-terminal	Interproscan
IPR013509	Domain	Ribonucleotide reductase large subunit, N-terminal	Interproscan
IPR039718	Family	Ribonucleoside-diphosphate reductase large subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11573	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004748	Molecular Function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005971	Cellular Component	ribonucleoside-diphosphate reductase complex	Interproscan
GO:0009263	Biological Process	deoxyribonucleotide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-