Gene detail

Detailed information of mRNA.BJAM.scaffold6190.17960 in Bathynomus jamesi Gene info

Gene ID	Annotation	Contig	Start	End	Strand
mRNA.BJAM.scaffold6190.17960	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2	scaffold6190	110245	123679	+

Gene Structure

More details in Jbrowse Sequence

CDS

mRNA.BJAM.scaffold6190.17960

GTCGAAAACGAATCGGAAAAGGTCATCAGCCAGTTGTTAACTGCCGAAGCTTCTTTAGAGGTGTTTGATAAACTTGGCAATTCCCCTCTCCATTTGGCTGCTTCCAGAAACACTGCAGTTATTCAGAACGTGGCTAGAGAGACCCCTCTACTGCTTGCAGCTAAAGCTAGTAAATTTGAAAACATAAAAGCTCTTATACAGCTAGGCGCCAATGTAAACCCTGAAGAAGAAATCTCTCCGCAGTTTGATACGACGTCTTACCACGAGAAACTCAAGATCTTGGAACTCACTAAAGATATAAGCCATAAGGATTTAAGTAAGGGAGGAAATTTACTTCATTGGGTGAAAACAAGAGAAATGACGAACGTTGCCCTCGACCTTGGATGCTTTCCAAATCTGTTAAATTCCCATGGCGAAACTCCTCTTCATATAATGGTATTGCGTGGTCGAATGGCTTGTTTGATGGCTCTCTTAAGTAGAGGAGCCGATCCTAATGTTATCAGCTTTGATGGCAATAATCCATTGCACTTGACAGCTTCCATTCATCATATTTCCATGGTTCAGAATTTGAAAGGAAGGGGACGCGTCTTGTGCTTGGATGGAGGAGGCATAAAGGGCTTGGTTCTCTGTCAAATGCTGGACGTAATCAGAGAACTTGTAGGCCAGTCTATTGCAGACTCTTTTGATTGGATATCAGGAACGAGCACTGGCGGCTTCTTGGCTCTTGATATCGCTTCAGGGAAGTCCGTTCATCATGCTCAGTCACTGTACTACAGTTTGAAAGACAGAGTTTTTGTTGGAACTCGACCTTATGATACAAAAGACTTAGAAAGTATGTTGAAAGATGAATTTGGGGAAAACACCGTCATGAGCAGTATTAAGAAAAATAGAGTGAGCATCACCACAACTCTCGCCGATCGATTACCAGCAGAATTACATATGTTTAGAAATTATGAATCACCAATTGACGTTTTAGACAAGTATTTGGATGGAGGTCTCGTATCAAATAACCCTGTGTTGGACACACTGACGGAAATTGAGGAGTGGAACATGGCTGTAAGGTCAGCTGGGCGTGAAGACGAAGTTTTTACTCCAACTGTGGTGGTATCTCTAGGATGTGGAAAATCTCCTGTAGTAAAGGTTGACAATGTTGATTTAACAGTTCCAAGTATTCTAGACATGCGAAGAGGCTTCCAAGCAATGTTTAACATGTTTAATCTTCTTGTGGAGCAAGCATGTGCATCTGAGGGCCGTATCGTTGACAGGGCGCGCTCGTGGTGCTCCGCCCTCCACGTGCCTTACTTTAGGTTCAACCCGCAGTTATCCGAAGATTGCAACATTGACGAGAATGATGACGCAAAGCTCATTCGTGTTATGTGGGAGGCTAGAGCATACATGAAGAATCAAGCTAATTACCTACATAATTTGAAAGAATTCCTTCTTAATCCTGACAGTGAGTCTAATAAGCCCGATGCCTTCGACCACCCATTGCCGCCTCCGAGACGGTCAACGTCCGCTCCCTCCACACCCACGAAACAAGAGAGAAGTTGCTCCGCCTATTCCTTATCCTGTGTTTCACAGCAAACGCTTCCTGAAGAAATTATAGATTTTTCAAGGAATTTAGATCTGAGAGAGAGTTGCAACGATTCTCCTCTGACCTGCGCGTCCTCTTCCACGCAGACTTTTCATCAGGAAGGCAGAACTAGCTTAGGTACTCCATCCTCTCCAGAAGAAACTTTTTATTCAACTGATTCTGAGCTTGAGCGACTTTCTCCTAAACGGAAAGACAATTCAAAAATAGTGCAAGAATTGTCGAATGGAAGCACTGATGCGATGGAATGCACGTGTAAGAAGGAAAATGCTCTCGGTAATACACAATCCGTGAGCTCTCTCGCTGAATCGTGCAAGTCGGATGATATTCCATGCTCGTTATTAATGTCAAGCAGTTCAGACTGTATAACAAGTGAAACTCTTTCTTGCCCCATTCTGATCAAACCGCATTTTGATGGTGGAACAAATTCCTCTGAAATGGATTTACCTGTTGAGGAAACTTCCAATACACAAAAAGAAATTCACCGATAA

Transcript

mRNA.BJAM.scaffold6190.17960

CTGTCGAAAACGAATCGGAAAAGGTCATCAGCCAGTTGTTAACTGCCGAAGCTTCTTTAGAGGTGTTTGATAAACTTGGCAATTCCCCTCTCCATTTGGCTGCTTCCAGAAACACTGCAGTTATTCAGAACGTGGCTAGAGAGACCCCTCTACTGCTTGCAGCTAAAGCTAGTAAATTTGAAAACATAAAAGCTCTTATACAGCTAGGCGCCAATGTAAACCCTGAAGAAGAAATCTCTCCGCAGTTTGATACGACGTCTTACCACGAGAAACTCAAGATCTTGGAACTCACTAAAGATATAAGCCATAAGGATTTAAGTAAGGGAGGAAATTTACTTCATTGGGTGAAAACAAGAGAAATGACGAACGTTGCCCTCGACCTTGGATGCTTTCCAAATCTGTTAAATTCCCATGGCGAAACTCCTCTTCATATAATGGTATTGCGTGGTCGAATGGCTTGTTTGATGGCTCTCTTAAGTAGAGGAGCCGATCCTAATGTTATCAGCTTTGATGGCAATAATCCATTGCACTTGACAGCTTCCATTCATCATATTTCCATGGTTCAGAATTTGAAAGGAAGGGGACGCGTCTTGTGCTTGGATGGAGGAGGCATAAAGGGCTTGGTTCTCTGTCAAATGCTGGACGTAATCAGAGAACTTGTAGGCCAGTCTATTGCAGACTCTTTTGATTGGATATCAGGAACGAGCACTGGCGGCTTCTTGGCTCTTGATATCGCTTCAGGGAAGTCCGTTCATCATGCTCAGTCACTGTACTACAGTTTGAAAGACAGAGTTTTTGTTGGAACTCGACCTTATGATACAAAAGACTTAGAAAGTATGTTGAAAGATGAATTTGGGGAAAACACCGTCATGAGCAGTATTAAGAAAAATAGAGTGAGCATCACCACAACTCTCGCCGATCGATTACCAGCAGAATTACATATGTTTAGAAATTATGAATCACCAATTGACGTTTTAGACAAGTATTTGGATGGAGGTCTCGTATCAAATAACCCTGTGTTGGACACACTGACGGAAATTGAGGAGTGGAACATGGCTGTAAGGTCAGCTGGGCGTGAAGACGAAGTTTTTACTCCAACTGTGGTGGTATCTCTAGGATGTGGAAAATCTCCTGTAGTAAAGGTTGACAATGTTGATTTAACAGTTCCAAGTATTCTAGACATGCGAAGAGGCTTCCAAGCAATGTTTAACATGTTTAATCTTCTTGTGGAGCAAGCATGTGCATCTGAGGGCCGTATCGTTGACAGGGCGCGCTCGTGGTGCTCCGCCCTCCACGTGCCTTACTTTAGGTTCAACCCGCAGTTATCCGAAGATTGCAACATTGACGAGAATGATGACGCAAAGCTCATTCGTGTTATGTGGGAGGCTAGAGCATACATGAAGAATCAAGCTAATTACCTACATAATTTGAAAGAATTCCTTCTTAATCCTGACAGTGAGTCTAATAAGCCCGATGCCTTCGACCACCCATTGCCGCCTCCGAGACGGTCAACGTCCGCTCCCTCCACACCCACGAAACAAGAGAGAAGTTGCTCCGCCTATTCCTTATCCTGTGTTTCACAGCAAACGCTTCCTGAAGAAATTATAGATTTTTCAAGGAATTTAGATCTGAGAGAGAGTTGCAACGATTCTCCTCTGACCTGCGCGTCCTCTTCCACGCAGACTTTTCATCAGGAAGGCAGAACTAGCTTAGGTACTCCATCCTCTCCAGAAGAAACTTTTTATTCAACTGATTCTGAGCTTGAGCGACTTTCTCCTAAACGGAAAGACAATTCAAAAATAGTGCAAGAATTGTCGAATGGAAGCACTGATGCGATGGAATGCACGTGTAAGAAGGAAAATGCTCTCGGTAATACACAATCCGTGAGCTCTCTCGCTGAATCGTGCAAGTCGGATGATATTCCATGCTCGTTATTAATGTCAAGCAGTTCAGACTGTATAACAAGTGAAACTCTTTCTTGCCCCATTCTGATCAAACCGCATTTTGATGGTGGAACAAATTCCTCTGAAATGGATTTACCTGTTGAGGAAACTTCCAATACACAAAAAGAAATTCACCGATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01734	Patatin	Patatin-like phospholipase	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR002641	Domain	Patatin-like phospholipase domain	Interproscan
IPR016035	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR047148	Family	85/88 kDa calcium-independent phospholipase A2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24139	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0016290	Molecular Function	obsolete palmitoyl-CoA hydrolase activity	Interproscan
GO:0047499	Molecular Function	calcium-independent phospholipase A2 activity	Interproscan
GO:2000304	Biological Process	positive regulation of ceramide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-