Detailed information of mRNA.BJAM.scaffold3805.14592 in Bathynomus jamesi Gene info
Gene IDAnnotationContigStartEndStrand
mRNA.BJAM.scaffold3805.14592DNA LIGASE 4scaffold380595641102118+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan
PF11411DNA_ligase_IVDNA ligase IVFamilyInterproscan
PF16589BRCT_2BRCT domain, a BRCA1 C-terminus domainFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001357DomainBRCT domainInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR021536DomainDNA ligase IV domainInterproscan
IPR029710FamilyDNA ligase 4Interproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45997DNA LIGASE 4Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005958Cellular ComponentDNA-dependent protein kinase-DNA ligase 4 complexInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006297Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0032807Cellular ComponentDNA ligase IV complexInterproscan
GO:0051103Biological ProcessDNA ligation involved in DNA repairInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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