Detailed information of mRNA.BJAM.scaffold3033.12944 in Bathynomus jamesi Gene info
Gene IDAnnotationContigStartEndStrand
mRNA.BJAM.scaffold3033.12944LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATEDscaffold303378398273589-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00047igImmunoglobulin domainDomainInterproscan
PF00052Laminin_BLaminin B (Domain IV)DomainInterproscan
PF00053Laminin_EGFLaminin EGF domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000034DomainLaminin IVInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR002049DomainLaminin-type EGF domainInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR013151DomainImmunoglobulinInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR050685FamilyLow-density lipoprotein receptorInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24270LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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TOP