Gene detail

Detailed information of mRNA.BJAM.scaffold1467.8037 in Bathynomus jamesi Gene info

Gene ID	Annotation	Contig	Start	End	Strand
mRNA.BJAM.scaffold1467.8037	ATP-DEPENDENT RNA HELICASE	scaffold1467	196397	202013	+

Gene Structure

More details in Jbrowse Sequence

CDS

mRNA.BJAM.scaffold1467.8037

ATGCCTTTTGAAAACTGTTGTTCTGATTGCAAACTACCAGGAGATGATTGTCCCCTCGTGTGGGGTCAGTGCTCCCATTGTTTCCACATACATTGCATTATGAAGTGGCTTCAGTCCCAACAACTTCAACAGCAGTGCCCCATGTGTAGGCAAGATGATGATTCACCACATAAAAAAAATAAAAGCAAAGGATTGGGTGATAATTCATGTAGTGGAAGGAAAAGAAAGTATGACAGTTCAGAGGATGAATATGAATATAGTGAGGAAAGAAATTCATCTACGTCTACACGCAGAAATAAATCGAGCAAATATAAACATGATGGCTCTCCAATGACACGTTCTAGATGTTCCTCCAGCCCCGAAGCACAATGCAATAAAGATTCTAAAAATTTACTAGTAGATCCTGTCACTAGTAGAAATCACTCTACAGTTAATAGGTGTTCTCATGTTTTGAAAGTAAGTTCACATCATAAGGATAACAGTCTTACCCTTTCAAATAAATCCCAATATGAAGATAGTTATGCAGTACCTGAAACCTCATTTAAGAAGTCATCTACTGGTAAGTATGAAGTTTTTGAAAGTGACTCGGAAGAAGAAATTATGTTTGAATGGAAGGATTACATGTGGGAACTAAACAAACTGTTCTTTTCTGAAGGAGATCTCATAAAGCGAGACACGGAAGAGTACAGAGAATTTTGGAAATTTCTTCAGAAATACCAAGTGATTAATAAACAAAAAAAGATTAAGGAAATGTGTCAGAAAAACAGTCAGTCGCAGTCTGAATGTGAGGGTCACAGTAAACTGTATGAATTGCCTCTTAAGTATAATAAGCGTTATTGTATCAATTTTGCCCTCAAAGGGAAAGAGATGAAACACCTGCAAGATAAATTGCCCCCAGTTGACTTAGAAGATGAAAGTGTAAAGAGATTATCAATGAAAAGACTGTTAGAATTCAAGCTTATTTTACTGCTTTATATGGATTTTGCACAGAAACGAAAACTTGGTAAACTTAGAGAGATTAGAGTGTCTCAGAAAAACTTACCAATAGCGGAATTCAAAGCTCATATCCTCAAAACAGTGAAAAATAATACTGTTACTATTTTGGCTGGTGATACTGGATGTGGAAAATCAACTCAAATTCCTCAATATTTTTTAGGTGCAGGATATACAAACATCGCTTGCACTCAACCAAGGAGGATAGCATGCATTTCTCTCTCCAAACGAGTGGCGTATGAAACATTGAATGAATATGGTTCTTCAGTTGGTTTTCAGATAAGATTTGAGAAGAGCAAAACGGAGCATACTAAAATTGTTTTCTTGACTGAAGGTCTGCTACTCAGGCAAATTGCATCTGAGCCAATGCTGCTTCAGTACAATGTTGTTATTCTTGATGAAATTCATGAACGTCACCTTCAGACTGATTTTTTGTTGGGAGTTGTTAAGTGTTTAATCGTGCAGAGACCAGAAATTAAAATTATTTTGATGTCAGCCACAATAAACCTAGATCTGTTCTCTAATTATTTCATGGGGAAAGCGCCTGTGATTCAAATTCCTGGAAGACTGTACCCAATTGAACTGAAATATTTCCCGATTAGCATTGCGGAGAAAAGCAATCAGAGTGAGAAGATTAATCCTACTCCTTATGTGAGGATTCTCCAATTGGTTGACACTACTTATCCATTGGATGAAAGAGGAGATCTCCTCATGTTTCTCAGTGGCATGAAGGAAATCACGACTGTGATGGAGGCAGCGAGATTGTATGCACAGCAATCCAGCAAATGGGTAATCTTATCATTGCATTCTACCCTCTCTGTATCTGAGCAAGAAAAGGTGTTTGATATCCCCCCTGAAGGGGTAAGGAAGTGCATCATATCGACAAACATCGCCGAGACGTCCGTGACCATCGACGGAGTGAGATTTGTGGTGGATTCTGGAAAGGTCAAAGAAATGAGTTATGACCCCATGCACAAAATGCAAAAGTTGAAGGAGTTCTGGATCAGCCAAGCATCCGCAGAACAGCGAAAGGGTCGGGCGGGGAGAACAGGTCCTGGGGTGTGCTTCAGGCTATATTCAGAGGCTGAATACTCTTCATTCGCGCCCTACACCAGTCCAGAGATAATGAGGGTTCCTTTGGATTCTCTCATTCTGCAGATGATTGCTATGGGGCTTCCCAACATCAAACTCTTTCCTTTCATTGAACCACCTCCGTCAGACAGTTTGAAGTCGTCCCTCGCCTCTCTAAAATCTCATTCTGCCATCGCAGGCAGTGAAGAGCTCACATCCCTTGGCCATCTTCTCGCACAACTTCCTCTCGATGTTAGTCTGGGAAAAATGCTGATCATGGGATCACTCTTTCATAGATTAGGACCTGTGCTGTCCTTAGCGGCTGCCATGAGTGTTCAATCTCCCTTCACGAACCGCGCTTACAGAGATCCAGACTGCGTTGTTCTAAACAAAGTACTTCAGTCCAACCACGGCGACCCTTTTACGCTTCTCATCGCGTACAGAGAGTGGTTGTACATCAAAACAAAAGGCGGAGAGGACTCGAGACGTTGGTGTAGGAAACGAGGTCTCGAGGAGCAGAGGTTCTATGAAATGACCAAACTCCGACAGCAGTTTATGCAGATGCTTCGGGAGAGCGGCATGCATGCCTTAACAGAAGACGGCACCAAAACGTCTTCAAGCAGTGAGAGAGCGAAGCGATACGGGGAGTTAACCGATGTGACGTGCGGCATTGTGTTTCAGGAATCGATACGAATCCTATCCTTAAATTCCTTCTGCGTCTTTTTAGGGTCCTCGAAAGACTCAAATTCTGAAGGTGGATCATGA

Transcript

mRNA.BJAM.scaffold1467.8037

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF12861	zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	Family	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR024991	Domain	Anaphase-promoting complex subunit 11, RING-H2 finger	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005680	Cellular Component	anaphase-promoting complex	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0031145	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0097602	Molecular Function	cullin family protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-