Detailed information of mRNA.BJAM.scaffold10541.21335 in Bathynomus jamesi Gene info
Gene IDAnnotationContigStartEndStrand
mRNA.BJAM.scaffold10541.21335SYNAPTIC ADHESION-LIKE MOLECULE SALMscaffold105416101880672-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00560LRR_1Leucine Rich RepeatRepeatInterproscan
PF13306LRR_5BspA type Leucine rich repeat region (6 copies)RepeatInterproscan
PF13855LRR_8Leucine rich repeatRepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000157DomainToll/interleukin-1 receptor homology (TIR) domainInterproscan
IPR000483DomainCysteine-rich flanking region, C-terminalInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR003591RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR017241FamilyToll-like receptorInterproscan
IPR026906RepeatBspA-type LRR regionInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR035897Homologous_superfamilyToll/interleukin-1 receptor homology (TIR) domain superfamilyInterproscan
IPR050467FamilyLeucine-rich repeat and fibronectin type-III domain-containingInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45842SYNAPTIC ADHESION-LIKE MOLECULE SALMInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0002224Biological Processtoll-like receptor signaling pathwayInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006955Biological Processimmune responseInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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