Gene detail

Detailed information of gene29829.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene29829.t1	E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER	chr10	20765386	20774579	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene29829.t1

ATGGCGGGAGATCATGCAGCTCTTGTTTGGTGCGACATACGCAAAAACATCGAAGTTTTACAACTTATTGTGAGCCTTAAGCAACAAGACAGCCAAAGAGAAGAAAACCACACATGTAAACATTCTAAAAGTACAGAAATTACAGTCTCAGCTAGCAATGTAGTCGTGAAAACCAGAGGGAAATCGAGCCAGCAAAAACACGTGAAAGAACAGAGCAAATGTGATTCTTGTACGCGAGAAATTCGCGTCGCTTTTCCAGACATTAAAGTTGATGCTATGTCATGCAATGGCCTCTCACTTGTACAAGATAAAGAACTTCAGATGAGGCTACATATTAACAACATGCAAAGCATACAAAGTTATGATGCAATTGGATATAAAAACATTGAAGAAGAGAGACAAACACTGCAGCAAGGACCAACAAAGATGGTCTGTAAAATATGTGGGAATACAATAATAAAGAAAAGGCACTTCAGACGTGTTCTAGAATTACCATCAGAACATTGGCAGCAGGCGTCACAAAATCTCTGTTGCCATGGCAATGTCAGTAACCTATCATCACTACAAGAAGCCTCCTTAAATCCTGCTGAAAATGACTGTCTCCTTGGAACCTACTTCATTTTGATCCATGCTGAAGCTGTAGAGGCTAAACACCTCATCATCACACAGGGTGAAACTGTCATAAAGTGCCATCGATGCTCCAGGCCAATAGGAGAAATAGTCATCAGGACTGATGGTACAGGGGACTCTCAAGTCAAGGGAATTAGGATCAACAAGCATACCATTACTACACAAGAGATCAATGTATTCAAAAACTACACAACAGAGGTTTACCTGTCCAGACTTTTACTTTCTAACCTACAGGGAAGAGTGAACTTCAAATTTCTAGTTAAAGGAATATCAAACAATGGGGAAACTAAAAACTATGTTCTGCTGTGGATCCTCAATGCAGATGCAGCAGTCGTCACAAACATTTGTCCCCCAGTGTCCAAATCCATGGAACACTTACATCTACCAAAACAATGCACTAATCACGACCCTACTCAAGCATCTGTTACCAATGGGTTGAAAATACTCTACAAGATACTTATAAACAGTAACATCAAAGACATTAAGAAGACATCTGGGAGAGACACGATCAGTTTACCAGCAGAGATGTGCCTTCAACTGCTGCTCATCCTCACTGCAAGTACACACAGCATTCCACCATCCATTAGACAAATGGAAGGATTCTTGGTTGGATATCTGAGGTCATGATGACTTATCGTTAAAGACATTCAAATTTATTTTACATGGTACTCATATTGTAGATAGTAAGCTTGTTTTAACAGTTGAAAATTACAATAAACTAAAAACGAAAGGAATAAAATTCATGACTGCTACTTGTCGTGTTTTAATCTCAATTTAAATAAAACACTTGACTTTCAAACATAAATTTATTTATTGGCTACAATTTCTCCAAGAATTCTCCACTTTTTCCAGAGATTTGTTTCAAAAATATAATCAACTACTATCTAATTGTATATCCATTGCCATGTAACCAATTACATATCTCAGGGGTTATTATGAAAAGAACCCACCAGCGTCTACTTTTGTCGCCATGGCAATCATTACCCGGAATTTCCAGGTGTTTCCATGGCAACCATAACAGTCTCAAAGTAGTTGCCATGGCAACTACAATAAATACCGGCTCGCCACAACCAGAATTAACCATATTAATTTTCTAATGTTCCTGCCTTGGCAACCACTGCATGATCTAGATAATGGTCATGGTGTGTAGAGTTGTTGCCATGGTAGCAGTTAATTATCCATACTTGTAACAAGTTCAAACCATTGTCTTAGAGCGTCACTCAAAGTGATAGGCAGAGAGTTGATGTCTCGCAGAATAACATAGAAGGGAAAGGGGAACTGTTCAATGTAGGACTTGATTTCAGGTGGCTTTCCTGGCCGAAAGATCGGCACCTTGATATCTAGTATTGAGTCCCTGTTAATTGGGTTGTCGATGATGACAAACACGAGGAATATGCCGGCTTCTTTAGCTGCGCGAACTGCACGTTTCACAGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09814	HECT_2	HECT-like Ubiquitin-conjugating enzyme (E2)-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019193	Family	Ubiquitin-conjugating enzyme E2-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31531	E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006513	Biological Process	protein monoubiquitination	Interproscan
GO:0030332	Molecular Function	cyclin binding	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0051865	Biological Process	protein autoubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-