Detailed information of gene29509.t1 in Actinoscyphia liui Gene info
Gene IDAnnotationChromosomeStartEndStrand
gene29509.t1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13chr101505412415137654+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01498HTH_Tnp_Tc3_2TransposaseFamilyInterproscan
PF06650VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF09333ATG2-VPS13_CATG2/VPS13, C terminal domainDomainInterproscan
PF12624Chorein_NVPS13-like, N-terminalDomainInterproscan
PF16908VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan
PF16909VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan
PF16910VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan
PF21679VPS13_CIntermembrane lipid transfer protein VPS13, C-terminalDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002492DomainTransposase, Tc1-likeInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR009543DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR015412DomainAtg2/VPS13, C-terminalInterproscan
IPR026847FamilyVacuolar protein sorting-associated protein 13Interproscan
IPR026854DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan
IPR031642DomainVPS13, middle RBG modulesInterproscan
IPR031645DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan
IPR031646DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR049424DomainIntermembrane lipid transfer protein VPS13, C-terminalInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006313Biological ProcessDNA transpositionInterproscan
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0019898Cellular Componentextrinsic component of membraneInterproscan
GO:0045053Biological Processprotein retention in Golgi apparatusInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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