Gene detail

Detailed information of gene29088.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene29088.t1	CLEAVAGE STIMULATION FACTOR SUBUNIT 2	chr10	6800256	6833207	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene29088.t1

ATGGCGACCGCGGTGCTTGATACAGTGAACCAACTAAAACAGCCAAGTAGTGCTGCAGACAGGTCACTAAGATCTGTATTTGTTGGAAATATTCCTTATGAAGCATCAGAGGAACAGCTCAAGGAAATATTCTCAGAGGTTGGACCAGTTGTTAGTTTTAGGTTGGTGTTTGATCGTGAGACCGGCAAACCCAAAGGTTATGGCTTCTGTGAGTACAAGGATCAAGAAACAGCACTTAGTGCCATGCGTAACCTAAATGGTTATGAATTGAATGGACGAGCTCTTAGAGTGGACAGTGCTGCATCAGAAAAGAACAAAGAAGAGATGAAAGGAATAGAAGGTATAACTCGTCCTGAAGCAAGCCCACATGGACCTGCTGTGGCACCTGGAGAAGCTCCTGAAGCTATTACCCAGGCTGTAGCAAGTCTACCACCTGAACAGATGTTTGAGCTCATGAATCAAATGAAGATTTGTATCCAAAACAACCCAGAAGAAGCCAGGCAGATGTTGTTACAAAACCCCCAGTTAGCCTATGCACTGCTACAGGCTCAAGTTGTGATGAAGATTGTTGATCCAGTCATTGCACAGAGTATTCTTCATAAGCCCAATGAGACAGCAGCACCCATACAGCTTGGTGGACCATCAACCCAGCAACCACCATCAGGTCCACCCATGGGTGGCGGTCCAGCACCAGCACAGCAAGGCCATCCAGCACCCTTCCCAGGCACAGGACCAGATATGGGACGTCGACCACCACCACATGAAATGAGAGGACCAAATGACCAATGGGGACCAGGCCCAGATCAAAGAGGTCCAGGGCCTGATGTAAGAGGTCACGGCATGCCCCCTGACATGCATGATAGAGGTCCTCCTGGTCCCAATCACAGAGACTTCCATGGTCCTCCTGATGGGCCCCATGGGCGTGGCATGCCTCCCCATGACAACAGAGGTCCTGATTACAGAGGACATCCTGATCGAGGTTTTGGTGAAAACAGAGAAATGAGAAGTTTTGATCCAAGAGATCCCAGATCACGTGAACCACCAACAAGAATGGACCCAAGAGATGAAAGAAGAGGCCCACCCATAGATCACAGAGACACACGAGACCCAAGGGGTGGTGGTCCCCCTCCTGAGCAGCGTTATGGTGGACCAGGTCCCAGAGATCCTCGTGATCCTAGAGGTGACCGAGGGCCCCCAGAGCGATTCCACAAAGGACCAGCACCAGGGCCAGGACCAGGGCCAGGGCCGGGACCAGGACCGGGACCTGGACACTCCCCACAGCATCAATGGAGTCCTCATCAAGGTGGGCCGCCTAGGGGACCAAATGGTCCAGGAGGAGGCCCTCCCCCACCGGTTCGACCCCCTGGTCCTGTTGGACCCCCAGGACCTGGCGGACCCCCTGGACCAGCAGGGCCCCCTGGACCTGGAGCCCCCGCTGTTTCTAGTGCTCCAAATGCACCTACAACTCCTAGTGATATTTCTGCACAAGATCAAGAAAAGGCTGCTCTTATCATGCAAGTACTCAGTCTAACCGACCAACAGATTGCGTTACTACCTGAAGAACAGCGACAGAGTATCATGATGCTAAAGGATCAGATAGGAAGATCATGAGAACATTCACTAACTTATTAACTTCTATAAATGACACTACATCTATCTATGCACATTGTTAGGGCCGGTTTACACTATCAAAGTTTCTTTGATCAAAGTACACTTTGATCATACTGTTTGACAATGTAATCGTAAAATATTTGATACAATGATACCAACCTACAAGTAGCCTGCGTAGCAAGCGTTTCTTTTGGGGGAAAGGGCGAAAAAGTTGTTTTTGGGATACCTGTGTTTCTGTTTTGGCCACGCGAAACTTAAGACGAGTGCAAAAAGCAGGAATTAGGTTTAGCGCGGCCAAAACAGAAACACAGGTATCCCAAAAACAACTTTTTCGCCCTTTCCCCCAAAAGAAACGCTTGCTACGCAGGCTAACCTACAAGACAACATTGAATGTAAACGCTGTTCAAACGTTTGATCGAACTTTGATGTACTTTGACGAGAATAGAAAACGTGCTATTTTCTTTGATCTTGGAACGTCTGTTTATACACGAAGTTACGATCACGGTACGGAGTTACGATCACGTTACCGAGTTACGGTCACGGTACGTAGTTACGATCACGATACGGAGGTACGATCACGGTACTGAGTTACGATCACGGTACGGAATCAACGTCATCTATTCAACCAATCACAGCGCACGAAATCACTACTCAGAATGCTGGGACACGGTACCGTCACGGCACGGCACAGACCGTAACCACTAAACGACTCTTGGATGCTTCTTTACTAACATCTCAGTGCTTGGTAATAAAATAGATGATTTAATGTTGTCTTTTCTTGTTCAATAAAGATGTTTCCTCTCCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF14304	CSTF_C	Transcription termination and cleavage factor C-terminal	Domain	Interproscan
PF14327	CSTF2_hinge	Hinge domain of cleavage stimulation factor subunit 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR025742	Domain	Cleavage stimulation factor subunit 2, hinge domain	Interproscan
IPR026896	Domain	Transcription termination and cleavage factor, C-terminal domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR038192	Homologous_superfamily	Transcription termination and cleavage factor, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45735	CLEAVAGE STIMULATION FACTOR SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0031124	Biological Process	mRNA 3'-end processing	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-