Gene detail

Detailed information of gene28974.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene28974.t1	LIPOXYGENASE	chr10	4454582	4468879	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene28974.t1

ATGTTCTTGGTGCTCGTGGATGCTTACTCAAAGTTTGTGGATATTATACCTATGTCACACGCCACTTCTTTCAACAGTATTGCTGCTTTAAGGCATACTTTTAGCTATTTTGGTTTACCAGAATTCGTGGCTACCGATAATGGTAGCCAGTTTACAAGTGCTGAATTTCAGAAATTCCTTAGTGATAATTGTATTCAACATACCACTACCGCTCCTGGGCACCCGGTTACTAATGGATTGTCTGAACGTTACGTCGGAGATTTCAAGGATAAGCTTACAAAGATTGTAGATACAGGAAAGCCTTTACAGACCAAACTAGATCGGTTCTTGTTAACTTACCGGGATACACCCACTTCACTAGGAAAGACACCTTCAGAGCTGCTAATGAACCGGCAACCCAGAATGAGGTTTAGTGCACTTAGAGTTAAGCCAAGTAAACAGGAAGTAAAGATATTTCAAGACAACCTGGACAACAAGCCCAAGTACACTCAGAATCAACCTGTGTTTGTTCGTAACTATGGAAAGGGTGCTCGCTGGGTAGTAACTATAATGTTCAGTGATAAACCTAAGTGTGCAGAGTTTGATGTTTGGATGGAAGACTCCCTATTTGGTATGCAGTACTTGAACGGAACCAATCCGATGATGATTGAAAGATGCAACAAGCTACCTGACAAATTTCCAGTCACTCAAGACCTTGTTAGAGACTTTTTGGATCGCGGGCTGACTTTGCAAGAAGAAATGAAAGCTGGTCACATTTACATGGCCGACTACTTCCTCATCGATGGTATTAGACGTAATGGCGAAGGCACAGACAAACTCCGTTATGTTACCGAAGCATTGGTGTTATTGTATGTGAACAAACAAGGAGATCTCGTGCCCATTGCTATTCAACTCTTCCAGAAACCTAGCGACGAGAATCCAATATGGACACCAAACGATGACAAACTGGACTGGCTGTTTGTGAAGATGTGGGTAAAAGCTGCAGACTCACAAATTCATCAGATGATAATTCACTTACTTAACACACATCTCATCATGGAGTGTATTGCTGTGTCAACCTGGAGAAACTTACCGTCCATCCACCCAGTTTTTAAGCTCTTGTTTCCTCATTTGCGCTCTATCATGGCCATCAACACACTTGGAAGAAAGGGGCTCATCAGCAAAGGGGGAGTCACTGATGTTACACTTAGCGTTGGTGGTGGAGGTCACATTGAACTTATGCAGAAAGTCTACAAAGACTTTACGTGGGACATGTTGGATATTCCAGCAAATCTTAAAAAGCGAGGGCTGGTGGACAGGGAAAAGCTTCCAAATTTTCACTACAGAGATGATGCACTCATTCTGTGGGAAGAAATAAAGAACTTCATCAGCGACATTATTGGGTTGTACTACCACAATAATGACGATGTCGTAAAAGATGCCGAACTTCAGGCGTGGGTCAAGGATGTACATGACAACGGCTTCACACCAACGAAGGGTCACGTAGACCACAAGTGCCCGGAGTCTCTTAAGTCACGTGATGAACTCATTGAGTTTTTGATACGTGCTATATTCATATGTTCATGCCAGCATGCAGCAGTAAACTTTGGCCAGCTCGATTGGTACGCGTTCATCCCTAATGCTCCTGCGTCGATGCACCTTCGACCACCTACAAAGAAAGGAGAGACGACTATGAGTAGAATCATGAACACACTACCAGCAAAGGCACAAACAGCAGTGCAACTTGGAACCGTGCATCTACTCACTCGTTTTGCAGAAGATGAGAAATTCCTTGGAGATTTTTCCGATGGTCTGTTCGTCGATGCTAAAGCACTGGAAGTTATTTCCAAGTTCCAAAAGAATCTAAAGAAAGTTTCCGATTCAATCAAGAACAGAAACAAGTCCTTGGACTGGCCCTACATTTATCTTCTTCCAGAAAGAATTCCAAACAGTGTGGCTATTTAGAATATCAGCCGGATTTCCATTAATTCTTTCGTTTTGTGTTTTTGAGTTAAATTTATTGATGTGCGAAAGTTAAATAAACTAATTAAGCCCATTACAGAAACTACATCAGTACAAAACATTGTGAGACTGGAGGTCATTTTGTTCTCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000907	Family	Lipoxygenase	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001885	Family	Lipoxygenase, mammalian	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013819	Domain	Lipoxygenase, C-terminal	Interproscan
IPR020833	Binding_site	Lipoxygenase, iron binding site	Interproscan
IPR020834	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR036226	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771	LIPOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0034440	Biological Process	lipid oxidation	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-