Gene detail

Detailed information of gene28969.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene28969.t1	LIPOXYGENASE	chr10	4349874	4359799	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene28969.t1

Transcript

gene28969.t1

ATGGCATGGGATTCCAGGGTTGTTGTCCCTGATTCACTCCGTACTGTTCTACTAAATGATCTACATGCGGAGCATCTTGGTATGGTTAAGATGAAGCAGTTAGCACGTCGATATATGTGGTGGCCTAAGATGGATAAAGAAATTGAGGAGACTGTAAAGTTGTGCCCTGCCTGTCAGGAAGCCGCCAAGTCCCCTGCATCGTTACAGCAAGCTTCATGGTCATGGCCTGGGGGTCCATGGAAGCGTTTACATCTTGATTTTGCAGGACCTTACCTAGATAAGATGTTCTTGGTGCTCGTGGATGCTTACTCAAAGATTGTGGATATTATACCTATGTCACACGCCACTTCTTTCAACAGTATTGCTGCTTTAAGGCATACTTTTAGCTATTTTGGTTTACCAGAATTCGTGGCTACCGATAATGGTAGCCAGTTTACAAGTGCTGAATTTCAGAAATTCCTTAGTGATAATTGTATTCAACATACCACTACCGCTCCCGGGCACCCGGTTACTAATGGATTGTCTGAACGTTACGTCGGAGATTTCAAGGATAAGCTTACAAAGATTGTAGATACAGGAAAGCCTTTACAGACCAAACTAGATCGGTTCTTGTTAACTTACCGGGATACACCCACTTCACTAAGAAAGACACCTTCAGAGCTGCTAATGAACCGGCAACCCAGAATGAGGTTTAGTGCACTTAGAGTTAAGCCAAGTAAACAGGAAGTAAAGATATTTCAAGACAACCTAGACAACAAGCCCAAGTACACTCAGAATCAACCTGTGTTTGTTCGTAACTATGGAAAGGGTGCTCGCTGGGTAGTAACTATAATGTTCAGTGATAAACCTAAGTGTGCAGAGTGTGAGGTTTGGATGGAAGACTCCCTATTTGGTATGCAGTACTTGAACGGAACCAATCCGATGATGATTGAAAGATGCAACAAGCTACCTGACAAATTTCCAGTCACTCAAGACCTTGTTGGAGACTTTTTGGATCGCGGGTTGACTTTGAAAGAAGAAATGAAAGCTGGTCACATTTACATGGCCGACTACTCCCTCATCGATGGTATTAGACGTAATGGCGAAGGCACAGACAAACTCCGTTATGTTACCGAAGCATTGGTGTTATTGTATGTGAACAAACAAGGAGATCTCGTGCCCATTGCTATTCAACTCTTCCAGAAACCTAGCGACGAGAATCCAATATGGACACCAAACGATGACAAACTGGACTGGCTGTTTGTGAAGATGTGGGTAAAAGCTGCAGACTCACAAATTCATCAGATGGTAATTCACTTACTTAACACACATCTCATCATGGAGTGTATTGCTGTGTCAGCCTGGAGAAACTTACCGTCCATCCACCCAGTTTTTAAGCTCTTGTATCCTCATTTGCGCTCTATCATGGCCATCAACACACTTGGAAGAAAGGGGCTCATCAGCAAAGGGGGAGTCACTGATATTACTCTTAGCGTTGGTGGTGGAGGTCACATTGAACTTATGCAGAAAGTCTACAAAGACTTTACGTGGGACATGTTGGATATTCCAACAAATCTTAAAAAGCGAGGGCTGGTGGACAGGGCAAAGCTTCCAAATTTTCACTACAGAGATGATGCACTCATTCTGTGGGAAGAAATAAAGAACTTCATCAGCGACATTATTGGGTTGTACTACCACAATAAAGGCGATGTCGTAAAAGATGCCGAACTTCAGGCGTGGGTCAAGGATGTACATGACAACGGCTTCACACCAACGAAGGGTCACGTAGACCACAAGTGCCCGGAGTCTCTTAAGTCACGTGATGAACTCATTGAGTTTTTGACACGTGCTATATTCATATGTTCATGCCAGCATGCAGCAGTAAACTTTGGCCAGCTCGATTGGTACGCGTTCATCCCTAATGCTCCTGCATCGATGCACCTTCGACCACCTACAAAGAAAGGAGAGACGACTATGAGTAGAATCATGAACACACTACCAGCAAAGGCACAGACAGCAGTGCAACTTGGAACCGTGCATCTACTCACTCGTTTTGCAGAAGATGAGAAATTCCTTGGAGATTTTTCCGATGGTCTGTTCGTCGATGCTAAAGCACTGGAAGTTATTTCCAAGTTCCAAAAGAATCTAAAGAAAGTTTCCGATTCAATCAAGAACAGGAACAAGTCCTTGGACTGGCCCTACATTTATCTGCTTCCAGAACGAATTCCAAACAGTGTGGCTATTTAGAATATCAGCCGGATTTCCATTAATTTCGTTTTGAGTTTTTTAGTTAAATTTATTGCTGTGCGAAAGTTAAATAAACTAATTAAGCCCATTAAAGAAATTACATCAGTACAAAACATTGTAAGACTGGAGGTCATTTTGTTCTCGAGGAAAACCAGTCAAAACCAATAGATTTGATTTCTTGCGACAGTCACTACAATATTATTTCTTCATAAACATCGCGTTGAAGAGTAGGCCACGAGTTTTTTTTTTCGGAAGGATTTCAACATTATCACTAAAGATTGTTAAATTTCAAAAAGTACTGTAAAAATCCATCGATTTCTAAAGTATGTAAATAGTTTGTAAATAGGATGTAAATTGAACCTCCATGTATTGAATTACAAACTATGATATTTTTATAGGTAATAGCATGGTTTATAGTGATATTTGGGATAAATACCACGAGTGATATTTTAAAATTGTGTTACATAATTTCACGAGCCGTAGGCGAGGTAGAAAGCTACAAGGCTACAAGATTTTCCACTTCAATCAGTACTTTTTCCATTGGAAATGATGCCAAAAGAAGAGTTTAACTTTCGTAAAACGAGCTGTACGTCAGTCACGAAAATATATGAACATAAAAGCTTACCATTCAGTTAAAATATTCTGAGAAAAACTTTAGCAAATCGGACAAACAAAGAAATCAGACACTAAAGATTATTCTAAACTTTATTTATTACTTTTGTCAGCAGTCTTTCTTTGAATTTACAGCCGAATTTACACATGGTAAAGTTGAAAAGCCTTCGCTGAAACTATGGCAATCATTTTTCCTTGTTCCCCGAAGAGTCAACCAAAGAAAACTATCTTTGACAGCTGATAATTTGTCCACGAATTTATCCTTTCTCCGTTTTTTGGAGTTTGAGATTTTTTTCTACGTCTATTTGACCTTTTCTTAGCACCGGGAAAGTCGCCGGGTCTTGCTTTTTTCGTCCGCCATTTTGATTTTTTCAAGGGTGAAACGCGGTTGCCATGGTGATTTTGAAATACCACTCTCGGGCGCTTGAAATACCACTATTAACGATAAATACCACTGCTCTCAACCAATCATATTGCAGGATTTTCTTGTATCGTGTTATAATACAAACTATTTACACATTATTTACAAACTATGGTATTTTACAAACTATTTACATACTTTGGAAATCGATTGATTTTCCAGTGAGTTACACTGAAAACTATGAAAAGACCTGAAACATTATCATAATTTTTTGCATTCGGCGATTTATTACAGTACTTAAGTAATCAATGACGGCCAAGATTTCCTATTATTATCGTTTTGTGTTTTGTACCTTGAAGTGCTTCAGCCCTTGATGAGCAACTAGAGCAGATTTCGTATGATTTTCAAAAGCTCCATGTCGTGTGGTGCTGTGTCTCGACGTTTTGTTTGGATGAGAACATTTTTTGACCAATCAACACGTCGAGACACGGCACGGCACGGCACAGATGTTTTCACAGTCATACGAAATCTACTCTGATTAATTACTACATCAGTATCGATACTTAGTAACTAATTAACGAATAATACAAAGGGTGATGTATGCAATTTCCATCCAAAATACTAGTACTTGCTTTTTAAGGGTGTTTAAGAGGTTTTAAGGTAAAATTTATAGTTGGAATGAATATTGCAATATACACCTGAATCATAATCATTATCGTTTCTTATTATTATTAGCAACTTGCTATTTCCATTTGCTAGTGTGCTACTTATATTCGCTATAATAAATGTTTTAGATGTTCATTTAATAACTGTTAAATAAAGTTGATTAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000907	Family	Lipoxygenase	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001885	Family	Lipoxygenase, mammalian	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013819	Domain	Lipoxygenase, C-terminal	Interproscan
IPR020833	Binding_site	Lipoxygenase, iron binding site	Interproscan
IPR020834	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR036226	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771	LIPOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0034440	Biological Process	lipid oxidation	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-