Gene detail

Detailed information of gene27547.t2 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene27547.t2	ACTIN FILAMENT-ASSOCIATED PROTEIN 1 FAMILY MEMBER	chr8	24694405	24710674	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene27547.t2

ATGAGCGTTAAGCAAATCTTCCAAAGTTTAAGCCATGACCAAAGGATACAAGTGGTAGACCTTACATTACCCGGGATTGAAACGTTTCTCAAAAATGTCTTGGCTCAAGAGACTCTCAGTGAAGAAGGAGAAAGTTTAAGGTGTCGATATGTGAAACTACTTGATGATTGTACGGGGCAAATTATTAACGATGCATACAGTCCACTCAAAACACCTCAGATTAAAGAATCGGTTTTCTCATTCAACGATGGACAGCGGAGAAGTAAAGACGATCCTCCATGCCAAGCATCTTATCCTGATAAGCCACCAATATGGTCCAGGAACTCTCGTAAGGGAACCGATAGTACAGAGGAGAGCGGTGTTTTCTTTGGTATCCAGTCTTCTCAATTTGCCAATCATTCTGGAAGTCAAGAAAACCATCGTCACTCTGACACCTTTGAATCCACGTCATCAAGAGATACCTTTATGTCAGATTCAGAAACGGAATTTTTGGAGTGGGAGAGTGATATCCACTTTATTGAGGATGGCTATATGACGGGCGATAACATAGATATGAATGTTCAACCCAATGAACTTGGTGAATTGTATGCCGGTGTTTTGTATATACGTGAACAGCCAGGCTGGCATAAACGATGGTTTGTAGTCACTGAAACATGCATGAAGTGCTATAAATATAGAAGTGATGAGAAAATGCTGTTTGAAATTCCACTTCAGGATGCACAATTCGTGTCAACAGACCGTAAACGAAGTAGAATGTATCCCATAACATTGTCCATAGCAAGACTTAAAGATAATATAACATTTGCAACAACAGAAGAAAAATCTAGACAAGAATGGATCTGCGTTATTAACCACGTGATTAAGAAGTATTCTGAAGAGGAACATTACACCGAAAGTACAAAGAACGGTTTGGTAGATGCCCCACCAAGCCACCAACATACGAACGATTTGATAGATGCCCCACCAAACCACCAACATACGAACGATTTGGTAGATGCCCCACCAAGCCACCAACATACGAACGATTTGATAGATGCCCCACTAAACCACCAAAATACGAACGATTTGATAGATGCCCCACTAAACCACCAAAATACTACGAACAGTTTAGACGAACAGTTAATCAAGCGTAACACATGGCACGCCGAACGGAGTGACAGAACAATGAACGATGTGTTAAGTCAGCTACGAGTAGGAGGGGAGGAAGAAATTGCAGAGTTAGATGTATCTCTGCCTCCTTCACAGGCTCAACAGCAATCATTTAAAGAACTGCAAGAGTGTTTGCCTGATATTCTACACAAACCAAAGTCTAAGAGTTGGAAGGGCGACCTATCAAAGAACGACTACTCACAACAAAATAATTCAAATCGTAAAGGTATCTCATCTAAACCAGATTGTGATTCGACGACGTTACCTCGTGTTAAGAGGCACGGTTCTCTAGCGAACTCCTTAACCAATAAAGCGGCTCGCGTCAGATCCAAGCTGTCTACATCATTTTTCAAAAAAGGAAAAAAAGATGACAAACTAAACCAAGACAGTGGACCACAAAGTACCACATTTTCAGGATATTTGATGCGAAAAAAGGGAAACGTTTGGAAAAATAGATGGTGTGCTGTAAAAGACAAATCTTTGTATTGTTACAAAGACTTCGGTGCTGAGTTACCTGAATTAGAGCTAAGACTAGAGGGGTTTAGCGTGTTTTCTATACCAGAGAGAGAGGCAGGCAAACCTTTTTCCTTCTTCTTGAGAGCGGAGAAGGAGCAGTTGCTGTTCTCTGCTGAAAATGATGCCGAATTAGAAGAATGGCTTGAAGTCCTGGAAAAGGAAGTAACAACCGCTGAGAAAGAAGACGATGAAATAAACATTTATCCAACAGATACTTTACATGGCATTTGTCCATCTTCGTCACAACCACATATAGAAACTAAAGTAGCTGATGCAGAAACCATTAAAGAGAAAGACACGTCTAGTGGCTCGGTGAAACGATTATCGCTTCTTGAAGCCATTGCTCACAAACTTGGTAAACATTCGTCCAAGGGTAAAGATTTTCCGGACCAGAAATGTGTCGAAGATGCTTCCAGTACAGCCATGGAGGGAATATTGTGTCATCGTACTGGGAACAATTACATTCAATGCAAGGTGAAACTGAACAACCACTGTCTCGAGATTGAACCCTTGAATGATTCATCGTTTGAACCAACAAAGTTTAGGCTAATAAACTGTATAGTACTTGATTGTACAGACACAGAGGGACCTCTTGTTATGGTGGTGAAAAGAAACATCGGAAAACCTCTATACCTCCAGGCTCACACTGAACAAGAATATTCTGCATGGAAAGCTGCTATCTTAGCTGACAGTCTCACCACTCCATCATGTATTGAGCGAGTTATATCGAGTGATGGTGAAACAGAACCTCCAGACAGCTTACTTGATCAAGATGATGTCTTTTTAAAAACAGATAATTTTACAACAGATCCCATCCAATCATCATTAAAAACTTGTACAGCTGGTGACGTCGGTAAAGTGAAGGTGAATACTTTAAAGAGGGCGTATTCAGCAGGTGGTATCGATAGGCTCAAATCCTTGACCAAAGGTTATTTGGTGTACTCCAATTTGAAACGAAGTCCCGTACGACGAACCATTTCCAATGTAATGAGTAGTTTAGACTTGTCCGCACCCCAAAAACAACGAAGTAAAACATTTGGTGGACTGGGAGTGAACGCCTCTGTTCTTGTTGGCATCAAATACTCATCGCGCATGTCCCTTCGTGTAACAAATGAGTTGTGGTCTCGACGATGGTGTGTCTTACAGCAGAATAACCTCCATTTCTTTGTCAATCCTGATGATTTGTCACCAAAAACGAGCATCCAACTTACAGAATGTGCAGCCGAACGAACTAATATGAAGGGAAAGAAGTTTACTTTTCAGTTGACAGTTCCGTCAGAGAAAACACCAGTTCACCTTGCAGCCCAGAATGAGAAAGAAGTTGCTATTTGGATTGACTTACTTAACGCCCAAAGACAACGATCGACACAAGAAAGCAAAGACAATTTGGATCTTCTTAATGGCATCTTGCTGTCTAGAGTAAAAAGTGAAAGTAACATCGAAACAAAATGTGACAGAGCTAGTTTAGGTATCGAAAAGAACGGGGACAAAGGTCTACGTAACATGTCAAAGTCACTCGTCGAACTTCGAAAAATCAGGCAAGCCAACGACTCTTCGAACGAAGAAAACTCTATAAAGTCTTCAGCTGTTCTGCCACAAAAACCCACTTCTCTACAAGACGTTCTGCTCCTTCTCCATGAACAACAACTCATGCAAAGTATGGGTCACCAGCGATACGTACGAGTGAAGAAAGCTCGTGGGAATTGGAAGAAATCCGCTGCGGCTGTCCTGAAAGATGCAAGTTCGCAGCCTGAATCTCCTGAAGCACCAAAGAAAAACCAGAATGTTGAGGAACTGCTAGAAAATGATCCTCAGATGCGAGACAAACCGCGAGATGCCTCTATAAGATCAGGACATTGTAATGAGCATACCGATGCCCTGCCTGGTGCTGAATCTTCAGAAGATTTTTTAGGAAAATGTAACAAAATGGCAGAAGGAGAAAGATTAAAAACTCTTAAAACAGAAACTTTGTTACGTAAACGACGGAATTCATTAAGTTTAGAGAAAGAAGTTTTGGAAAAAAAACTTGAAAAAACTCAAGAGAAAAAAACTGGTGTTAAAAAGTTGCTTGGTAAAGAATTGCCTAAAGATCAAGACGATATTATTCGTACAAAGAAAAGACTTGATGAAATTAACCTTAAACTTGCTCACGTTGACCACGATATGCAAGAAAATAAAAGTAAAGAAGCAGCTGTCATGGAAAATATAACAGTTTTCAAAACAAAAACTTTGAGGAAGTTATCGGGAAGTGGTGATAGTTTGATGACCAGTGCGACTGAACACGCTGTTAGGTCACTACATAGTGAAAGGAGAGCAAAGTATCGAGAATCACCCACAGGTTCGACATCATTACGCGATTCTTTCGACGATAAAACATGTGAAAGAATTGCGTCACTTCATCGTAAAGAATCCAAGAAGACAGAACAAACCACCTTGATGTGTTTAGAAGAAGAAATGAGAAAGATTTCTCCTAATCCACCAAGAAGAAAGAAACATGGAAGTAAGAAAAGAATGTCATCGTCATCAGAAGGTTCAGCGGAAGACGCGTCTCTCAAAGGATCACCATCGACCTATTGCAGCTCGTCTCTCAAAGGATCGCCATCGACCAATTGCAGCTCGTTTGATGATGAGCACAATGACTACGGCCTTTCTCAGTCACACGACAAACTGTTTGGTTGGGATAATGTCAAGAGAAAAGGCCACACGAAATCATCTTCAATACAAGGAGAATCACTATCCATGACAATGTCTGGTGAACAAGACTCTATAGATAGTTCTACAGCCTATTCAGTGCCAAAAACTAATGACCAACACAGGCCAAGTTTAATCACTGCTTTATCACAAATTAAGGATTTTGAAGAATTCTTAGAGATAAATCGACGTCGGTAA

Transcript

gene27547.t2

GAAATAACGTTAGGTTTGTACTGACTTAAATGCTGTAAAGACCAATTACTAGTCAGTTAACCAGTGGAACGGTTGCCAGAGACACGACTGGACTTGCTAACAGATCTTGAGACGAGAATTAGACATCGTTTTGTGTACATTCCATTGGGAGAAGAAATGGCTCGTTCGACCTTCACTACGCGTACCTTATACTTATATGCTGAGGAACAGTGATAATGAGTGTAGTACGGCTAATGTTAGGCTTAGCGAACGATGAGCGTTAAGCAAATCTTCCAAAGTTTAAGCCATGACCAAAGGATACAAGTGGTAGACCTTACATTACCCGGGATTGAAACGTTTCTCAAAAATGTCTTGGCTCAAGAGACTCTCAGTGAAGAAGGAGAAAGTTTAAGGTGTCGATATGTGAAACTACTTGATGATTGTACGGGGCAAATTATTAACGATGCATACAGTCCACTCAAAACACCTCAGATTAAAGAATCGGTTTTCTCATTCAACGATGGACAGCGGAGAAGTAAAGACGATCCTCCATGCCAAGCATCTTATCCTGATAAGCCACCAATATGGTCCAGGAACTCTCGTAAGGGAACCGATAGTACAGAGGAGAGCGGTGTTTTCTTTGGTATCCAGTCTTCTCAATTTGCCAATCATTCTGGAAGTCAAGAAAACCATCGTCACTCTGACACCTTTGAATCCACGTCATCAAGAGATACCTTTATGTCAGATTCAGAAACGGAATTTTTGGAGTGGGAGAGTGATATCCACTTTATTGAGGATGGCTATATGACGGGCGATAACATAGATATGAATGTTCAACCCAATGAACTTGGTGAATTGTATGCCGGTGTTTTGTATATACGTGAACAGCCAGGCTGGCATAAACGATGGTTTGTAGTCACTGAAACATGCATGAAGTGCTATAAATATAGAAGTGATGAGAAAATGCTGTTTGAAATTCCACTTCAGGATGCACAATTCGTGTCAACAGACCGTAAACGAAGTAGAATGTATCCCATAACATTGTCCATAGCAAGACTTAAAGATAATATAACATTTGCAACAACAGAAGAAAAATCTAGACAAGAATGGATCTGCGTTATTAACCACGTGATTAAGAAGTATTCTGAAGAGGAACATTACACCGAAAGTACAAAGAACGGTTTGGTAGATGCCCCACCAAGCCACCAACATACGAACGATTTGATAGATGCCCCACCAAACCACCAACATACGAACGATTTGGTAGATGCCCCACCAAGCCACCAACATACGAACGATTTGATAGATGCCCCACTAAACCACCAAAATACGAACGATTTGATAGATGCCCCACTAAACCACCAAAATACTACGAACAGTTTAGACGAACAGTTAATCAAGCGTAACACATGGCACGCCGAACGGAGTGACAGAACAATGAACGATGTGTTAAGTCAGCTACGAGTAGGAGGGGAGGAAGAAATTGCAGAGTTAGATGTATCTCTGCCTCCTTCACAGGCTCAACAGCAATCATTTAAAGAACTGCAAGAGTGTTTGCCTGATATTCTACACAAACCAAAGTCTAAGAGTTGGAAGGGCGACCTATCAAAGAACGACTACTCACAACAAAATAATTCAAATCGTAAAGGTATCTCATCTAAACCAGATTGTGATTCGACGACGTTACCTCGTGTTAAGAGGCACGGTTCTCTAGCGAACTCCTTAACCAATAAAGCGGCTCGCGTCAGATCCAAGCTGTCTACATCATTTTTCAAAAAAGGAAAAAAAGATGACAAACTAAACCAAGACAGTGGACCACAAAGTACCACATTTTCAGGATATTTGATGCGAAAAAAGGGAAACGTTTGGAAAAATAGATGGTGTGCTGTAAAAGACAAATCTTTGTATTGTTACAAAGACTTCGGTGCTGAGTTACCTGAATTAGAGCTAAGACTAGAGGGGTTTAGCGTGTTTTCTATACCAGAGAGAGAGGCAGGCAAACCTTTTTCCTTCTTCTTGAGAGCGGAGAAGGAGCAGTTGCTGTTCTCTGCTGAAAATGATGCCGAATTAGAAGAATGGCTTGAAGTCCTGGAAAAGGAAGTAACAACCGCTGAGAAAGAAGACGATGAAATAAACATTTATCCAACAGATACTTTACATGGCATTTGTCCATCTTCGTCACAACCACATATAGAAACTAAAGTAGCTGATGCAGAAACCATTAAAGAGAAAGACACGTCTAGTGGCTCGGTGAAACGATTATCGCTTCTTGAAGCCATTGCTCACAAACTTGGTAAACATTCGTCCAAGGGTAAAGATTTTCCGGACCAGAAATGTGTCGAAGATGCTTCCAGTACAGCCATGGAGGGAATATTGTGTCATCGTACTGGGAACAATTACATTCAATGCAAGGTGAAACTGAACAACCACTGTCTCGAGATTGAACCCTTGAATGATTCATCGTTTGAACCAACAAAGTTTAGGCTAATAAACTGTATAGTACTTGATTGTACAGACACAGAGGGACCTCTTGTTATGGTGGTGAAAAGAAACATCGGAAAACCTCTATACCTCCAGGCTCACACTGAACAAGAATATTCTGCATGGAAAGCTGCTATCTTAGCTGACAGTCTCACCACTCCATCATGTATTGAGCGAGTTATATCGAGTGATGGTGAAACAGAACCTCCAGACAGCTTACTTGATCAAGATGATGTCTTTTTAAAAACAGATAATTTTACAACAGATCCCATCCAATCATCATTAAAAACTTGTACAGCTGGTGACGTCGGTAAAGTGAAGGTGAATACTTTAAAGAGGGCGTATTCAGCAGGTGGTATCGATAGGCTCAAATCCTTGACCAAAGGTTATTTGGTGTACTCCAATTTGAAACGAAGTCCCGTACGACGAACCATTTCCAATGTAATGAGTAGTTTAGACTTGTCCGCACCCCAAAAACAACGAAGTAAAACATTTGGTGGACTGGGAGTGAACGCCTCTGTTCTTGTTGGCATCAAATACTCATCGCGCATGTCCCTTCGTGTAACAAATGAGTTGTGGTCTCGACGATGGTGTGTCTTACAGCAGAATAACCTCCATTTCTTTGTCAATCCTGATGATTTGTCACCAAAAACGAGCATCCAACTTACAGAATGTGCAGCCGAACGAACTAATATGAAGGGAAAGAAGTTTACTTTTCAGTTGACAGTTCCGTCAGAGAAAACACCAGTTCACCTTGCAGCCCAGAATGAGAAAGAAGTTGCTATTTGGATTGACTTACTTAACGCCCAAAGACAACGATCGACACAAGAAAGCAAAGACAATTTGGATCTTCTTAATGGCATCTTGCTGTCTAGAGTAAAAAGTGAAAGTAACATCGAAACAAAATGTGACAGAGCTAGTTTAGGTATCGAAAAGAACGGGGACAAAGGTCTACGTAACATGTCAAAGTCACTCGTCGAACTTCGAAAAATCAGGCAAGCCAACGACTCTTCGAACGAAGAAAACTCTATAAAGTCTTCAGCTGTTCTGCCACAAAAACCCACTTCTCTACAAGACGTTCTGCTCCTTCTCCATGAACAACAACTCATGCAAAGTATGGGTCACCAGCGATACGTACGAGTGAAGAAAGCTCGTGGGAATTGGAAGAAATCCGCTGCGGCTGTCCTGAAAGATGCAAGTTCGCAGCCTGAATCTCCTGAAGCACCAAAGAAAAACCAGAATGTTGAGGAACTGCTAGAAAATGATCCTCAGATGCGAGACAAACCGCGAGATGCCTCTATAAGATCAGGACATTGTAATGAGCATACCGATGCCCTGCCTGGTGCTGAATCTTCAGAAGATTTTTTAGGAAAATGTAACAAAATGGCAGAAGGAGAAAGATTAAAAACTCTTAAAACAGAAACTTTGTTACGTAAACGACGGAATTCATTAAGTTTAGAGAAAGAAGTTTTGGAAAAAAAACTTGAAAAAACTCAAGAGAAAAAAACTGGTGTTAAAAAGTTGCTTGGTAAAGAATTGCCTAAAGATCAAGACGATATTATTCGTACAAAGAAAAGACTTGATGAAATTAACCTTAAACTTGCTCACGTTGACCACGATATGCAAGAAAATAAAAGTAAAGAAGCAGCTGTCATGGAAAATATAACAGTTTTCAAAACAAAAACTTTGAGGAAGTTATCGGGAAGTGGTGATAGTTTGATGACCAGTGCGACTGAACACGCTGTTAGGTCACTACATAGTGAAAGGAGAGCAAAGTATCGAGAATCACCCACAGGTTCGACATCATTACGCGATTCTTTCGACGATAAAACATGTGAAAGAATTGCGTCACTTCATCGTAAAGAATCCAAGAAGACAGAACAAACCACCTTGATGTGTTTAGAAGAAGAAATGAGAAAGATTTCTCCTAATCCACCAAGAAGAAAGAAACATGGAAGTAAGAAAAGAATGTCATCGTCATCAGAAGGTTCAGCGGAAGACGCGTCTCTCAAAGGATCACCATCGACCTATTGCAGCTCGTCTCTCAAAGGATCGCCATCGACCAATTGCAGCTCGTTTGATGATGAGCACAATGACTACGGCCTTTCTCAGTCACACGACAAACTGTTTGGTTGGGATAATGTCAAGAGAAAAGGCCACACGAAATCATCTTCAATACAAGGAGAATCACTATCCATGACAATGTCTGGTGAACAAGACTCTATAGATAGTTCTACAGCCTATTCAGTGCCAAAAACTAATGACCAACACAGGCCAAGTTTAATCACTGCTTTATCACAAATTAAGGATTTTGAAGAATTCTTAGAGATAAATCGACGTCGGTAACTGCTTCACACTGAGAAGGCGTCACCATTCACAGAATATATTTGAATGGAACAGAATATATTTGAATGGAACAGAATATATTTGAATGGAACAGAATATATTTGAATGGAACAGAATTATATTTTACGTTGAAAATCATATCAATACAAAACTAGGTGAATATATTTTGACTGGAAATTGATTATGAATTATATTTATTGATTTTCTCCAAAGAACTTGTACATTTGTTTGAACGGTTTTGATCATTACTGACGTCAATGATTTGTGTTTCAAATGAACTCTGAATCAGTGTTTTGCAATATTTTACTTTTTCTTACATTGTTTTTATACAACGTTTTCATATCACATGCTTTACTTATTTCACTTGTAACGAATTAATTCTATAGAAAGAGCGCAATATTATTTACATCATTAAATAATCAATATATTATCAATAAAGACTTAACATCGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR030113	Family	Actin-filament associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14338	ACTIN FILAMENT-ASSOCIATED PROTEIN 1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0007346	Biological Process	regulation of mitotic cell cycle	Interproscan
GO:0017124	Molecular Function	SH3 domain binding	Interproscan
GO:0032675	Biological Process	regulation of interleukin-6 production	Interproscan
GO:0032757	Biological Process	positive regulation of interleukin-8 production	Interproscan
GO:0042169	Molecular Function	SH2 domain binding	Interproscan
GO:0045742	Biological Process	positive regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-