Gene detail

Detailed information of gene26387.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene26387.t1	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11	chr8	3022628	3044983	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene26387.t1

ATGTCGTCGCGAAGATGGTTCCATTCTAACGTGAGTGGTATAGAAGCAGAGCGATTGCTTACAGAGCGAGGTCTTGATGGCAGCTATCTTGTACGACCCAGTAAGAGCAACCCTTTGGATTTCACTCTCTCTGTACGGAGGAATGGAGAAGTAACTCACATCAAGATACAGAACAGTGGTGACTACTATGATTTATATGGAGGGGAGAAGTTTGCCACCCTGTCAGAACTGGTGCAGTACTATACTGAAAACCCTGGCCAGCTGAGAGAGAAAAATGGCCAGCTCATTGAGATGAAATACCCTTTGAATTCAGCCGACCCAACCACAGAGAGATGGTTTCATGGTCATATGTCCAGCAAGGAAGCAGAGACAGTGTTGTTGGACAAGGGAAAGAATGGAAGTTTCCTTGTCAGAGAAAGTCAGGGTAAACCAGGCAACTATGTATTAACTGTAAGATGTGATGATAAAGTGACGCATGTCATGATCAGAAACCATGGCAATGGCAAGTATGATGTTGGTGGTGGTGAAAAGTTTGAAGATTTGACAGAATTAGTTGAGCATTACAAAAAGAACCCCATGGTTGAGAAATCTGGTACTGTGGTACATCTAAGGAATCCATTTAATGCTACAAGAATCAATGCTTCTTGTATCGAAGACAGAGTTAAAGAATTACAAAAAGAAAATAAAAATGTTACTGGTAAAGCTGGCTTTTATGAAGAGTTTGAGGTTCTTCAGAAGCAAGAATGCAAACACTTATACAGTAGAAAGGAGGGAGAAAGACCAGAAAATAAGTCTAAAAACAGATATAAAAATATTCTTCCTTTTGATCATAGTAGACTAATGTTGAAAGGACGTGATCCAAATGTTGTGGGTTCTGACTACATTAATGCCAACTTCATCAATGGTGAATCCAAAAGCACCACCAAGCAGTACATAGCGGCACAAGGCTGCTTGCCTGTCACTGTAGAGGATTTCTGGGCAGCCATATATCAACAAAACTGTAGAATTATTGTCATGACAACCAAAGAAGTTGAAAGAGGAAGGAATAAGTGCACAAGGTACTGGCCTGACACTGACACCACCAAAGATGTTGGCAAATATCAAGTTAAACACGTTCTCGAAACAGAACTACCAGACTATATCCTGAGACAGTTTGAACTCACCACTATTGATGATTTTATCCCAAGAACTATTTATCACTTTCACTATACTGGCTGGCCTGACCATGGTGTCCCTAAAGACCCTAGCCCTGTACTAACCATTCTACATGAGGTGGATGTCAGGCAGAAAGGAATCCATGCAGCAGGACCAATTGTAGTTCATTGCAGTGCTGGCATTGGAAGAACAGGCACATTTATCGTCATTGACAGCCTTATTCATCTCATCAAAGAACAAGGTCTTGATACAGAAATTGACATCTCTAAAGCAATTCAAAATGTACGAGCTCAAAGATCAGGCATGGTGCAGACTGAGGCTCAATATGAATTTATCTACAAAGCAATTCAACATTACATCAGTACAGAGATGGCTAGGATCAAATCATCTGATGCACCTTCAGCAGTGTATGGTAACCTGTCTGGGATTGTGAGAGTAAACCCTGATGCACCCCCTGCCGTCCCATCCTACTTCCCTGCTAGAAAAGATGAAGTGAAAGGACCTCCTCCTAAGCCTCCTCATTTATAGAATGGACCGACACCAGAAGTAGAATCACACAGTAAACCCACAGATGAACACTTTGCTCAAGTAAAGATCAAAGAAATACTTTATTAATGCTTTTAGTAATCAACAGACTGTGTATTGAATATGGACTTTAAACAGCTATGACGGCAACTGCAAGGAAGACAGCACTTCATAAAGTGTTGCTCATCATTTCACTTTTTGGCCTTCAGTTTCTATTCAGACTCAGATTTTTGAAATAGATTTAATCATAATAGAGTTATATTCTAGTCAAACAGAAAATGAATTGGTTAACGTTCTCCAGTTCCCGTTCTCCACAAATCGTGAAATTAGGAGTTTTCACGTTCTAGTTTTGCAGAATACGGTTGAATTGGTGTCAGTTGTGCTCATTTTCACGTGCAGTTATTGTATTTCGTAATTTCGTCCATTGTTTTATGCCGTCTTCCCTGACGTCGCCGTCGTGGTTGCTTAAGGTCCCTAATACTAGCACTGCAACACATGCAGACTCATGCAGTACATGTACATCTCACAGGTATGAGATCGAGACATGGTAAGTGAGTCTGCATGTCACTTGGTCTTACATCATAAGTGAGAGCCAATAGTAGCTACGTAATTAATATCAGAAATCAATTATAAGAGATTGTCCTGTCTCCACCAATCACTGACTATTGCCAGCAATAGTCCTTTCACAAGATACAGTCTGTGACTAGCCAAAGCCTCGGTTTCAGTACCATCATGCACTGAGATTTGTATTAGTAATCCCATGGATTTGATTGGACAATATCACAATAAAGTACCAAGAGTTGCTAATTAAACAATATATAATTTACATGATAACACCATTTAGAAAACAGCTACTGTTATGAAACCGAGGTTTTGGCTAGTACAATATTCACTCAACTATATCTTGGGAAAGAACTATAAGTACTTGCATGCAATCGTGTTATTGAAAGTATTGTGGATGTAATTAGTAATGCAAAATTGCAGGCTTTTCATTATTCTTTTGTTTGCAAGCTAAACAGCTGGTTCCAAGACGTCGTGGTCGGTTGTGATCTAACCCTTCTTAAAATACCCTGACTACCACCGTCCAACAAGAATTAATGTCAAATACCATACAAATTTATTAAGTCCATAGCACAAGTGGTATTAAAACACTTTCATCAAATACAAGTGGTATTTTTCATTAATTCTTCGAGTACTTCCTATTGATAATACACAGATATAAAAATTATCTATTATAATTATTATATGCATTTCTGGTTTAAAAACATCTCCAAAGCAAATCTAAAGCAGTCATCCTGTGTACTAATTCAAAAATTGCACAGTGTTAAGAATAACAGCCAATCAAAGCACAGTAGTTCTTGTAGATGCGTTATTATAGAGATAATTGCAAATGTATCAATAATTATTAATTGTAAAATTATCTAAATATTAAGTTTTTCTGTAAAAAAAATTCACAAATTTGTACACAGTGTGGCTGTATAGCAATAAAAATGAAGTTGAACCAATAAATCACACATTTTCACTTTAACAGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000980	Domain	SH2 domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR012152	Family	Protein-tyrosine phosphatase, non-receptor type-6, -11	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46559	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0004726	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0030971	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0050839	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0070374	Biological Process	positive regulation of ERK1 and ERK2 cascade	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-