Gene detail

Detailed information of gene24591.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene24591.t1	SUCCINYL-COA SYNTHETASE BETA CHAIN	chr7	14194890	14200693	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene24591.t1

ATTTCTGGATTGCCTTCACTTTATCGTAGTTGTAGCAGCGTATTGAGGTCCTCTGTGCTTCGATCTAAGCAGTTGTACCCAGTCAGTGTTCTTCCAGTACGATGGCTGAACCTTCACGAATATCAAAGTAAAAAGATTATGCAAGATAATGGACTTCACGTACAGAGATTTATTGTGGCTGAAAATGCTGAAGATTCAGTCAAACTTTCCAAGGAAATGGATGTTGCCGAGTATGTGATCAAGGCACAAATCCTAGCTGGAGGGCGTGGCAAGGGGACATTTAACAGTGGTCTACAGGGAGGGGTGCATCTAACAAGAGATCCAGAAAAGATTGGTGAACTAACCAAGCAAATGTTTGGCTACAACCTTGTTACAAAACAAACATCACAAGAAGGGGTACCAGTAACAAAGGTGATGGTTGCTGAGGCATATGATATCAACAAAGAGACATACCTAGCTATTCTAATGGATAGAGAATATAATGGTCCTGTAATAGTCGGCAGCCCTAAGGGTGGTATGGACATCGAAGAGGTTGCCAAGGAAACTCCAGAATTTATTTACAAGGTCCCTGTGGATATAGTGCAGGGGTTACCTGACAAGGATGCCAAGTGGTTAGCTGATAAACTTGGTTTCACTGGTCCATTGCAAGAAGAGGCAGCTAATCAAATCAGAAAATTATATCAACTTTTCCTTAAAGTGGACGCGACACAGATAGAAATAAACCCATTTGGCTTGACGCCTGATGGGAAAGTTGTGTGTTTTGATGCAAAGTTCAACTTTGATGACAATGCAAAGTTCCGTCATCAAAATATTTTTGCCATGGAAGACAACACTGAATCAGATCCACGTGAAGTGCAAGCTGCTAAACACGATCTGAACTACATTGGAATGAACGGCAACATTGCATGTTTAGTAAATGGTGCTGGCCTAGCCATGGCTACAATGGATATTATTAAACTACATAACGGTGAACCTTCTAATTTCCTGGACCTTGGTGGTGGTGTCCAGGAAGAAGGAGTTTTACATGCATTGAAGATTGTCAGTGAAGACCCTAAAGTCAAAGTGATATTGGTGAACATCTTTGGTGGTATTGTGGACTGTTCTGTTGTTGCAAAAGGAATTATCTCTGCTTATGAAAAACTACATCTGGATATTCCAATTGTCGTCCGATTAGAAGGTAACAATGTCGATAAAGCCCACCATCTCCTTGAAAAAAGTGGAATGCCTCTATTAGCAGCAAAAGATATGGATGACGCTGCATTGAAGGCAGTGGTTAGCCTAGGAAACTGGTATTGAATGATACCAAGCAATGTACACTAGGAAATATTTCACTATAACACATAAATACTATGCTGTTATGAGGTCCTACAAAATTAATCTGTGAATCAGTCATATATATATTGTGTGTTTACAAAATGCCTTGATCTCCTCAAAACAAGAAATGTGATATACTTCTAAAAAGAAATCTTATAGCTGAACCCTGCTATCTTGAACTTGATTACTTTGAAAATCCTTTTATCTCGAACACAAATCTATTTCCCTTGGATCATTTTATTACTCATTTACTGTTTCTAATTTCAAATCTCCACTACAGTCAATTCCCATTAAAGTGGACACCCTTGGGGCCATGATTTGGTGTCCACAATAGGGGAAGTTATTTTTAGTAAATTCTTTGTAAATTTTTCAAAGTACGGAGACCGGCTGCTGTCTGTAATAGAGTAGTGTCTGTAATAGCGAGGTGTCGTCGAGGCGAGAGTTGACTGTATATCGAACATTTTGTGGGGGAGGACGAGATAGCAGGGTTTAAAGGTATATGTTTAGTAGAGCTTTCATCTTGCAGCAACAATTAAGAAATCAATCCATACACGTACTTTGCGTTGTATTTAGTAAATGGGATGAGATAAAAAGAGGGAAGTGGAAACATGAATGCTAACTGTACCAGCTCTAAATGGTATTTCTATGGTGATAGGTGAAAATAACAGAAACTTTTATATTAAAAATATCCGCTTATGATAGTGATGAAAATGATGATGATGCAAATGATGATGATGATGATACTACTACCAGAATGCAATTTTATGGTTAATAAAAACACACCAATCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00549	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF08442	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005809	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR005811	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR013650	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR017866	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11815	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004776	Molecular Function	succinate-CoA ligase (GDP-forming) activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006104	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0042709	Cellular Component	succinate-CoA ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-