Gene detail

Detailed information of gene23253.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene23253.t1	SERINE/THREONINE PROTEIN KINASE	chr6	42392809	42413783	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene23253.t1

ATGGCAGAGATATTCAGATCAGCTCTTAGCTACATTAGCCAGACGGGTAAAATAGATAACGACTTCGTTGGTCATTACGTCGAACTGGGACCAGTGCAATTAAAGATCAAAAAAGTGCTTGCCGAAGGTGGCTACGGGTTTGTTTTCGTGGCACAAGACGAGAAGACCGGCAAAGTGTATGCGTTAAAGAGATTGATGGCTGGAGATGAAGCAGGCAATAAGTGCATTATTGGAGAAATCAACACACTTAAACGCATCCGTGGACATCCAAATATTGTACAGTTTTATTCTGCAGCATCACTTGGTGAGAAGGAATCTGGTCATGGAATGACAGAGTATTTGATTCTAACAGAACTTTGTACAGGCGGAGAGCTTATTAAAGTGATGAATGAACGAAATGGGAATCCATTTCCTCCCAATCAGCTGCTAAAGCTGTTTTATCAACTATGTAGAGCTGTTGCTCATCTCCACAAACAGGAACCTACCATTATCCATAGGGATTTAAAAATTGAGAACATGCTAATAAGTACCAAAGGGTTGGTAAAGCTCTGTGACTTTGGTAGTGCAACAACTACTTGTCTTTATCCTGATGAGTCATGGACAGCTTTACAGAGAAGTCTAGCAGAGGATGAGATCCAAAGGAACACTACTCCAATGTACCGCGCACCAGAGATGATAGATCTGTATAGTAATCACCCTGTCACTGAGAAAGCTGATATATGGGCTATAGGATGTATTTTATTCTATTTATGCTTTATGGAACACCCTTTTGAAGATTCTGCTAAACTAAGGATCATCAATGCCAAGTACACCATCCCCGAAACAGACCGGACGTACACTGATTTCCACCATCTTATTGATATGATGCTTAAAGTCCATCAAGAACAGAGACCAGACATCAAGACTGTCCTTACAGAACTAGAGGCTCTTGCTAAGAAATGGAATGTCGACCTGAAGGGACCTGTGTTTGAAAGTAGTATGGAAATGTCTAGTTCAGGACTGAGTGATACAACTAGTACAATGAGTACAACTGCTAATCAGGGAGCTGGGGGTTCTGCACTACTTGGTGGTGTCATGAAAGGAGCAAACAGTTTATTTACTAATATCAAAGGAATATCCAACAAGGCCATTCAGTCTGTAGCAGGATACGTCAAGAATGACTTTGATATGTCCTATATCACATCAAGAATCATTGTCATGTCATTCCCTGCAGAAGGACTGGAATCAGCCTACAAGAACAACATTGATGATGTACGGGAGTTCCTAGAAGCCAAGTACCCTGAGAAGTACTTTGTTATAAACATCTCCCCAAGGAGTTATAAGATTGAAAAACTTAGCACCAGGGTTTTGCACGCTTGCTGGCCTACCAACAGACTGCCTCCATTAGAAAGTATAATTTCATTATCACGTAAAATCCATGCCTGGTTGAAAAAGGATAGCAGTCGTATTATTGTCATTCACTGCCAGGATGGCCGAGTGTCATCAGGTGTTATGGTAGCTGCATTCTTTGTCTTCTGTAAGCTGTTCAAAAACCCCAATGTGGCTGCTGATATGTTTAGTATACGACGCTGTGGTATTGGTCACAAAGTCTCGCTTACCCCTTCTCAAGAAAGGTACCTTTTATACATAACTCAACTTATAAACAATCCAAGTATAAGACCACAGAAGTCCTCGTTATACATAAAATCAGTTACTTTGCATCCTGTCCCTGCTTTTAACAAATCAAGAAATGGCTGCAGACCATTTATCGAAGTCTACCAAGGGGAGAAGAGAGCCCTGACTACGGTACAAGAAATCGAGAAAATGAGGGAGTTCACACTGAGCGACGGTAAAATTACGTTTCCAGTCAACCTGACATTGATAGGCGACGTCACTATCATAGTGTACCATGGTAGGACAACGCTTGGCGGGAAAGTACAGGGCAAGATGGCGTCCATCAGGGTTTTCCAAGTACAATTTCATACTGGATTTATCAACCCTAACGCTACCAAGCTGAAATATTCCAAAACTGAACTAGATGTAACCAAAGAAGATGAATCTAAATTTCCCAGTCGGTTCTGCTTAACCCTGGATGTAAGTATCGACACAGACCGTGTTAGCAGTTCAACGCATACCTGGGACACGCTCCACCCAGATAGACTGGGACCTAGTGTTTGTTTCTCCAGTAAAGAGGAATTCCTGGAATGTCAAGAAGAGTTTGTTCATGCCGACGATCGAGAATCCTCCATGACTTTCGACGCTATTCACGAAAATCGACCGAGTTCCCCCGAACAGGAACCCCAAGAAATCCCTTCCCCCGTTGCTACTGACGACCACGCTACCAGTTCTGAATCAGAAGCATCTAAAGACGAATATAGTGATGACGAATTCACGAAAGAGCTTCTAAATCTACGATCACCGAACTCGGCGACTGAAGTCGCGAGTGGGAAAGGAAAAGTGGATAAATTCTTTCAAGAGAAAGAAACGAATGGTCATCACATTTCGAGTTTTGCTTCGTTCGCCGACTTCAATAGCTTACAGCACAATCCACAAGCAGATTTGTTAGACATAGGTCCACACAGACAGGATACTAAAGATCGTACTCACAGTATTACAGAAACCTTAGATCTACTGAACCTGGGCATTGCCCACAAGCACGTGCGCCATCCACCCAATTCAGGGACCGAGAATGGAATTGACTTATTGAAAATATCAACCAGTCCCAAGCAACACCAAAGTGTGGATCTGTTTGTAGGCTTAGATAAACACAAATCTGATTATAAAAAGAATCGAAGTGCCAATGATCTGTTGGCATCGCCCACTCACGAAGAGGACGATTTCTTCAAACAGCTGGGAAGTCGTAGCTCTTGTTCCAGCCAGGAGAACGTGGCATCCCCTGGGGGTCTAAGTACTTCGCCGACTTTTGACCCGTTTGCATTCAAACCTAGTCCAAAAAAAGAAAAACCGTCGCATAGCAACGCAAAGAGTACATCCCCTGTGGGTACTAGTGAGAATATGTTTGATCCTTTAAATCAACAATCCCTATCCCCAGGGTACACTACTAAGGATGCTTTTGACCCTTTTGGAACAATGGCATCCCTTTCACATAGTAATAAGACAGTTGATAAGGACGTTACGTCACCTACGAGTCAGACCAGCTCTTTACAAGCCACAGGGTTCCCAACTAAGGCTGGCAACGACCGGAAGTCACCTACACCTAATGCGTTTCAGCCAACTTCAACTTCCGGCCAAAACGTACCCGATCTGTTTGGAGGTGTGGCAAGTAAAGATACTCAAGGAAAAACTGGAAACCAATTCACAATGGGCGACGATTTATTTGCAGTTGGTTTTGAATCAAAGCTTTCAAATCAGCGCAGGCCAGATTTGCTAGGAGAATGGGGCGAGGCGTTTAAATCAGAAGTACCACTTAATCCCGTCCCCTCCCCCCTCGCAACTCCACCAGCTTCACGAAAGGCTGATAACACAGCATCCACTTCAAGTGACCCGTTTGCTGATTTTGGTAACATCAAGGCTCAGGGACCCCCTACTGCGTTTCCTAGCAACCAGAAGGTATCCTCACCAAGTCAACAGCGTAAACCATTTGGAGGTCAAACCTGGGGTCAGTCGCAGCCAAAGCCTCAGGCAAGACCTAACGGTGAAGTTCCTAAGAAACCTCAGCAGGCATTCACCCAGTCCAAAACCAAGCCTAACTACACACCCACCTACTCTGCAGCGGCTGGTGGGTCCAGTGTGTTTGGGGAGTACGGACTAAGAACATCGCATATGCCAAAACGCGTGGGCAAGGACGAGTTTAGTGACTTCTTGAATGTCCATGGTTTTAAGCCTTGTGAGAGAGAAAAGCCGATACCAGGAAAACTAGCAGACATGAAGAAAGAACAAAACAAACCAGATGATCCCATCACTGCCAAGGTACAAGACTGGGCCAGCGGTAAACAGAGTAACATACGTGCTTTACTGTGTTCGTTACACTTGGTTCTGTGGGAAGGTGAAGATAGATGGGCACCTATTGGTATGCATCAGCTCGTCCAGCCTGAACAGGTGAAAAAGATGTACAGAAAGGCTGTTCTGTCTGTCCATCCTGATAAGCTCACTGGTCAACCAGAGGAGACTCTAGCACGAGCGATATTCATAGAACTCAACGAAGCTTGGGCCGCATTCGAAGAGGGTGGTTCTAAACCACTTTATTAG

Transcript

gene23253.t1

TCTTTTCACTGTGAGTTATTGATCATGGCAGCCAACAAATTGTCCTGAATTTTGTACTTTGAACACATGCAGCTAGGACACTTGAATGTCCATTGATTCATAATGGCAGAGATATTCAGATCAGCTCTTAGCTACATTAGCCAGACGGGTAAAATAGATAACGACTTCGTTGGTCATTACGTCGAACTGGGACCAGTGCAATTAAAGATCAAAAAAGTGCTTGCCGAAGGTGGCTACGGGTTTGTTTTCGTGGCACAAGACGAGAAGACCGGCAAAGTGTATGCGTTAAAGAGATTGATGGCTGGAGATGAAGCAGGCAATAAGTGCATTATTGGAGAAATCAACACACTTAAACGCATCCGTGGACATCCAAATATTGTACAGTTTTATTCTGCAGCATCACTTGGTGAGAAGGAATCTGGTCATGGAATGACAGAGTATTTGATTCTAACAGAACTTTGTACAGGCGGAGAGCTTATTAAAGTGATGAATGAACGAAATGGGAATCCATTTCCTCCCAATCAGCTGCTAAAGCTGTTTTATCAACTATGTAGAGCTGTTGCTCATCTCCACAAACAGGAACCTACCATTATCCATAGGGATTTAAAAATTGAGAACATGCTAATAAGTACCAAAGGGTTGGTAAAGCTCTGTGACTTTGGTAGTGCAACAACTACTTGTCTTTATCCTGATGAGTCATGGACAGCTTTACAGAGAAGTCTAGCAGAGGATGAGATCCAAAGGAACACTACTCCAATGTACCGCGCACCAGAGATGATAGATCTGTATAGTAATCACCCTGTCACTGAGAAAGCTGATATATGGGCTATAGGATGTATTTTATTCTATTTATGCTTTATGGAACACCCTTTTGAAGATTCTGCTAAACTAAGGATCATCAATGCCAAGTACACCATCCCCGAAACAGACCGGACGTACACTGATTTCCACCATCTTATTGATATGATGCTTAAAGTCCATCAAGAACAGAGACCAGACATCAAGACTGTCCTTACAGAACTAGAGGCTCTTGCTAAGAAATGGAATGTCGACCTGAAGGGACCTGTGTTTGAAAGTAGTATGGAAATGTCTAGTTCAGGACTGAGTGATACAACTAGTACAATGAGTACAACTGCTAATCAGGGAGCTGGGGGTTCTGCACTACTTGGTGGTGTCATGAAAGGAGCAAACAGTTTATTTACTAATATCAAAGGAATATCCAACAAGGCCATTCAGTCTGTAGCAGGATACGTCAAGAATGACTTTGATATGTCCTATATCACATCAAGAATCATTGTCATGTCATTCCCTGCAGAAGGACTGGAATCAGCCTACAAGAACAACATTGATGATGTACGGGAGTTCCTAGAAGCCAAGTACCCTGAGAAGTACTTTGTTATAAACATCTCCCCAAGGAGTTATAAGATTGAAAAACTTAGCACCAGGGTTTTGCACGCTTGCTGGCCTACCAACAGACTGCCTCCATTAGAAAGTATAATTTCATTATCACGTAAAATCCATGCCTGGTTGAAAAAGGATAGCAGTCGTATTATTGTCATTCACTGCCAGGATGGCCGAGTGTCATCAGGTGTTATGGTAGCTGCATTCTTTGTCTTCTGTAAGCTGTTCAAAAACCCCAATGTGGCTGCTGATATGTTTAGTATACGACGCTGTGGTATTGGTCACAAAGTCTCGCTTACCCCTTCTCAAGAAAGGTACCTTTTATACATAACTCAACTTATAAACAATCCAAGTATAAGACCACAGAAGTCCTCGTTATACATAAAATCAGTTACTTTGCATCCTGTCCCTGCTTTTAACAAATCAAGAAATGGCTGCAGACCATTTATCGAAGTCTACCAAGGGGAGAAGAGAGCCCTGACTACGGTACAAGAAATCGAGAAAATGAGGGAGTTCACACTGAGCGACGGTAAAATTACGTTTCCAGTCAACCTGACATTGATAGGCGACGTCACTATCATAGTGTACCATGGTAGGACAACGCTTGGCGGGAAAGTACAGGGCAAGATGGCGTCCATCAGGGTTTTCCAAGTACAATTTCATACTGGATTTATCAACCCTAACGCTACCAAGCTGAAATATTCCAAAACTGAACTAGATGTAACCAAAGAAGATGAATCTAAATTTCCCAGTCGGTTCTGCTTAACCCTGGATGTAAGTATCGACACAGACCGTGTTAGCAGTTCAACGCATACCTGGGACACGCTCCACCCAGATAGACTGGGACCTAGTGTTTGTTTCTCCAGTAAAGAGGAATTCCTGGAATGTCAAGAAGAGTTTGTTCATGCCGACGATCGAGAATCCTCCATGACTTTCGACGCTATTCACGAAAATCGACCGAGTTCCCCCGAACAGGAACCCCAAGAAATCCCTTCCCCCGTTGCTACTGACGACCACGCTACCAGTTCTGAATCAGAAGCATCTAAAGACGAATATAGTGATGACGAATTCACGAAAGAGCTTCTAAATCTACGATCACCGAACTCGGCGACTGAAGTCGCGAGTGGGAAAGGAAAAGTGGATAAATTCTTTCAAGAGAAAGAAACGAATGGTCATCACATTTCGAGTTTTGCTTCGTTCGCCGACTTCAATAGCTTACAGCACAATCCACAAGCAGATTTGTTAGACATAGGTCCACACAGACAGGATACTAAAGATCGTACTCACAGTATTACAGAAACCTTAGATCTACTGAACCTGGGCATTGCCCACAAGCACGTGCGCCATCCACCCAATTCAGGGACCGAGAATGGAATTGACTTATTGAAAATATCAACCAGTCCCAAGCAACACCAAAGTGTGGATCTGTTTGTAGGCTTAGATAAACACAAATCTGATTATAAAAAGAATCGAAGTGCCAATGATCTGTTGGCATCGCCCACTCACGAAGAGGACGATTTCTTCAAACAGCTGGGAAGTCGTAGCTCTTGTTCCAGCCAGGAGAACGTGGCATCCCCTGGGGGTCTAAGTACTTCGCCGACTTTTGACCCGTTTGCATTCAAACCTAGTCCAAAAAAAGAAAAACCGTCGCATAGCAACGCAAAGAGTACATCCCCTGTGGGTACTAGTGAGAATATGTTTGATCCTTTAAATCAACAATCCCTATCCCCAGGGTACACTACTAAGGATGCTTTTGACCCTTTTGGAACAATGGCATCCCTTTCACATAGTAATAAGACAGTTGATAAGGACGTTACGTCACCTACGAGTCAGACCAGCTCTTTACAAGCCACAGGGTTCCCAACTAAGGCTGGCAACGACCGGAAGTCACCTACACCTAATGCGTTTCAGCCAACTTCAACTTCCGGCCAAAACGTACCCGATCTGTTTGGAGGTGTGGCAAGTAAAGATACTCAAGGAAAAACTGGAAACCAATTCACAATGGGCGACGATTTATTTGCAGTTGGTTTTGAATCAAAGCTTTCAAATCAGCGCAGGCCAGATTTGCTAGGAGAATGGGGCGAGGCGTTTAAATCAGAAGTACCACTTAATCCCGTCCCCTCCCCCCTCGCAACTCCACCAGCTTCACGAAAGGCTGATAACACAGCATCCACTTCAAGTGACCCGTTTGCTGATTTTGGTAACATCAAGGCTCAGGGACCCCCTACTGCGTTTCCTAGCAACCAGAAGGTATCCTCACCAAGTCAACAGCGTAAACCATTTGGAGGTCAAACCTGGGGTCAGTCGCAGCCAAAGCCTCAGGCAAGACCTAACGGTGAAGTTCCTAAGAAACCTCAGCAGGCATTCACCCAGTCCAAAACCAAGCCTAACTACACACCCACCTACTCTGCAGCGGCTGGTGGGTCCAGTGTGTTTGGGGAGTACGGACTAAGAACATCGCATATGCCAAAACGCGTGGGCAAGGACGAGTTTAGTGACTTCTTGAATGTCCATGGTTTTAAGCCTTGTGAGAGAGAAAAGCCGATACCAGGAAAACTAGCAGACATGAAGAAAGAACAAAACAAACCAGATGATCCCATCACTGCCAAGGTACAAGACTGGGCCAGCGGTAAACAGAGTAACATACGTGCTTTACTGTGTTCGTTACACTTGGTTCTGTGGGAAGGTGAAGATAGATGGGCACCTATTGGTATGCATCAGCTCGTCCAGCCTGAACAGGTGAAAAAGATGTACAGAAAGGCTGTTCTGTCTGTCCATCCTGATAAGCTCACTGGTCAACCAGAGGAGACTCTAGCACGAGCGATATTCATAGAACTCAACGAAGCTTGGGCCGCATTCGAAGAGGGTGGTTCTAAACCACTTTATTAGGTCCCTTCAGTATCTCTTATAATGAAAGAGATGGAAAAATGGAATAGACTTAAAGGATGCGGATTTCTAATTATCGGAATCTGGTTCAGATTCGGAAATCTGGAATGGAATGCAGGAATGCGGAATTCATATTGAATTATTAGAATCACTGTTCGTTCCTTCAGCATGCTCTCTCATTGCGTATTAAGACTCGAGAGGATTGGAATGGACTGAAGGATTTTGGAATTTGAGTGATTAGAATTACGGTATCAGTTCGGAAAATTAGGAATGGACTCAATAGAATACAGATTTTCAATAGTTTACAAATTAGAATATTTAAATTTCCAATCACAATCGCCACGAATACGTAAGAAAACAATTACTGTTTTAGGCCTTAAAATATTTTTGGATTCTTCACGAATGTTTCCTTCAAAATTTTTAAATAGTCACTAATGGGTTGCCTGTGGTTTTATGGGCCGAGAAGGACTGGGGTTAAAAGTTAGAGAAATCCAAGACAGGAAACCCAACCAATTTGTCATTTTCTCACAAATGTTAGTGCTGGGGTCACGTTCAATAAAACTTTTACATGTGTAATTTACAAGTGTAGCTATTGTTTTAGCTGCCATGAACAATAGCTACACTTGTAAATTACAAATGTAAAAGTTTTATTGAATCGACCCTGGTTTCCCTGTGATGGCTCACACAGGAAGCCCACTTATTGTACTAGTAGTTAGCAATGTATTTATGTTAATATAGCCGTGGGTCCCGGCATACAAAAATAATTGTATTTCCACCGTGTTTATAGAGTTTGTATAATAACTCACATTATAATTCCTCTAAGAGTCTTGAACATCGGAGCCCTAAATTTTCCATTCAACTAATATTCATACTTCGTAAAAATATATGGGAAGAATTAAATGTTTTAATAGCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF10409	PTEN_C2	C2 domain of PTEN tumour-suppressor protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001623	Domain	DnaJ domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR014020	Domain	Tensin phosphatase, C2 domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR029023	Domain	Tensin-type phosphatase domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22967	SERINE/THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0035612	Molecular Function	AP-2 adaptor complex binding	Interproscan
GO:0045747	Biological Process	positive regulation of Notch signaling pathway	Interproscan
GO:2000369	Biological Process	regulation of clathrin-dependent endocytosis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-