Gene detail

Detailed information of gene22586.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene22586.t1	FLAP ENDONUCLEASE FAMILY MEMBER	chr6	31040535	31047768	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene22586.t1

ATGGCGGACGATGATGACATGGGCTCCGTACAAAAGATGGATGCATCAGCAATCTCAGTTGCATCAGATGATCAGCTCAAAGAACTTGGCCTAAACAGTATTGGAGATAGATTGAGTTTGAGAGGACTCTGTGCATCATCAACTAATCAACATAAGCTTGAAACATCTGATCGAAAAAGTAAACTTCTTGAGAGCTTTCTGAATCAAAAGAAACCAAAGCATAAGAGCAAATCAAAAATTAATTCACACTCTTCTACAGCATCAATAAGTTCAGAGGTAAAAGAAAAAGGGAAGTGTATCCAGCTGGGATGGCTAAATTGGGATGAAATCAAAAACAAGTTCCTACCAGTGAGACTGCCTAAAGGAGGTGGAACCAGAGATGTTTCTTTACCTGTTACTGCTACACGGGAAGTCATCATGGAACAGTGTCTCCAACTCTTCTTCCCAGATGGTGTCAGTCAATCTTTTGGACAAGCAAGTGAATTCAACTTTGGTTTAGCCAATTTCAACCAGGTTAAAATTGGAGACACTTTGAAACAAGGAGATAGTGAAATTCCATTTACTATCAGTAATTACCAGAATGTATACAAGACCAGCAAATTAAGGTTATACTTGACATCAAGAAAGGTTAACACAGAAAAGGATAGTACAGAAGATAACAACAAACAGAATGATGACCAATATGATGACTATCATTTACCTTCTTATACAGATATGTTTCACTTGGATTGTTTTGATCAAGATGCTGAACTTTATAAAGTTGAATCAAAGGACAGTATTAGTGTGAATTTGGTAGAGATTGATGATGACTCTCAGTCTGACTTCCCAAGTATGTTAGACTTGTCTACTAACCAAAGCCATACCCTTATTGGATCATCAAATGACAGACAAGTATTGTTGCAAGACCAGAATAAAAGCTATGAAGAATCACTGCAAAGTGATAGAGCAAAAGAAGCTCAAATTGAAAGAGAGATTCACAAGGCAGAGACCAAAGAAGTCCTTCGACTTGAAAGAGCAAGTAGAGTTGATAAAGAACCTGATACAAATGAAAAGTGCTGTGAAGTGCAAGTGCGATATCCATTTCTTGGATTATTAAGGCGCCGCTTCCTGTCCTCTGCTCTGCTGTCTTCTGTATATGATTGGATAGGGTCCCAGTCTCCCGACCCGGCACAGTTCCAGTTTTTCTTGCCAGAGGGAAAAATGGTAGAACCAAACATTCCAATCAGTTTTGTCAACAAATGCACATTGAATATGATAGAAACTGCACATGCCCCATCTTTGGATGGTGGATCACCAATACAATTTAGAGGTTTTGGTGAAGTTCATGATGACAATAATGACACAGCTGCCTACTCCCCTAGTGCACAAGTTAATGATCACAGTGATGAGGAGTTACTGCAGGGGCTGATAAATGAACATCCTATGGAAGAGCAGTCACAAGTCAATGTTTCAGATGTCAGCATGTCACAAGAACTAAGCACTACAGAATCCATCTCACAGTTTATCGAAGTTTTCCAGAATTATTTAAAGCTGTTGAAGAATGCAGGGGTAATCCCTTATATCGTATTTGATGGAAAAAAAGTACCAGCAAAGGCCAAAGAAGACGAACGAAGGCAAACGGAAAGAGAAACAAGAACCAAAAGGGCTGCTCAACAGGCTAATCAAGATTTGTCAAACCGATTACTAGGCCAAGCGGCATCGATAACTTGTGAAGACGTCACTTCTTGTATTCAGTTGTGTATAAGCCAAGATGTTCAGTACATTGTTTCCCCATATGAATCCGATGCACAAATCGCTTTTTTAATAAAACACGGATATGCTGATTTTGTAATCACGGAAGATTCAGATCTCCTTGCCTATGGATGTGAAAAGGTTGTAGTGAAACTTCGCCTCAGTGGAGATGGAGAATACTTTTCCCTTTCTGACGTTTTGGAGAATGTAAAAATCAGTGCGGACCAATTCTTAGACTGCTGTATCACTGCTGGATGTGATTATTTACAAAATGTACGTGGTATTGGCATCAATAAGTCATTCCAAATGCATCTAGATCCATTGGTGGATGTATTTTCAGTACTGGAAACGAAGGGCGCACCTCATGATTACCGAGATAAATTTGCAAAGGCAAAGGCAGTCTTTCGTCATCAAACTGTTTTTGATCCACGGCTTTTAAAGACCACACATCTTAGTGAATGGGCGAGTTTGCCTTCACAGGAACTACAACATTACTGTGGAATCATTCTTGATGATGAATTGGCTAATGAATTGGCTGTTGGGAACATCAATACTGCAACTGGAACAAAAAGTAATTGCTTTCCACTATTTAACAAGTCAAGAACATCCAGGACCAATCAAACTCAGAACCATGATTGCAGGCAAAAGCAAGATGATTTGGATTCAACTACTGACCTACCAAATGCAGAATTTCTCATCAAAGTCATTGAAATTAGCGATGAATGGCTTACATGGAATATTCCCTCTTTCCCTGTCATGGCCCTTGATTTTAACAAAGTGAAATTAAATTTCAATGGAAGAGAATGTATTGGCCTTATTATGAGAGGTCAAACTATTGCCTCTGGAACAATGAAATGCAAAACAAGTTGCTGCATTAACATAAGTGACAAAAAGTACATGGTCATTTGGGAACCATCGCCAGTAACAGAAGTTGATGATGCACTATCAGAGTCAGATACAATGTCAGATTCTGACATTATGAATGACGAAAACCCTCATTCATTGCCGTTTAAAGTTTTAGGAACATGTCATTGCACAACGAGACAGAAAGCTCTTGAAGAGGCACACGAATACATGTATGAACACAACAGGCATGTTTTTGCCAAACTTCAAGCTGAGCCAGAAAACATTTATGACTCCAATGCAATTGAAGTTTTAATTAAGTCAACAGAATCCTATGTTAAAGTTGGCTATATTGCTAGAGAATTAACTTGTTATGTAAAACCTTATCTAGACAGTCCAAATTTAAATGTTTCTGTTCGAAACATTCGTTTTCGCACAACCTTTCTTATGGTTGGTTTTTATATGAGCATCACACTGACAAAGAAGGGAAGTTGGCATAACCAAGCTGTGAAAGCAAGTAAAAGTGTCAAATAA

Transcript

gene22586.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan
PF00867	XPG_I	XPG I-region	Family	Interproscan
PF08797	HIRAN	HIRAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012	Domain	UBX domain	Interproscan
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR014905	Domain	HIRAN domain	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-