Gene detail

Detailed information of gene22082.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene22082.t1	CHROMOBOX PROTEIN	chr6	21799001	21804593	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene22082.t1

ATGACGATCGTTATGACAACCCAGGTCGCAACAGACGAACCCCAGATGGTCACCCTATTTGCAATACATGCAATCGTCGTGGCCACACAAGTTATAACTGCCGTAGTCTATCCAATCCACAAAGAGATCCTCGCCTTCCTTCTGTACCCTTCAAGGCTTTCTCAAGCACCTTTTGACGATTACGTTGAAGTCCCGACCAACGTCAAGCATTATAACCGTTGCTATGACAACGAATCAAACGGATCTTTCTCTTCACATGAAGGCATTCCTTCTGTCCCTCTGGTTCCTTCTTCTTACTTACAGGAACCCACACCTTCCCTTCCTAATGACTATCTCGAAACGGTGTGTGATTGGCGTCTTTCTGCTAACGCCTCACATACACCTCCCCCAGCTGTTTCAGATACTATATATCAAAATAATACCATATCGACTTCACAGTCGACTCAAACGTCCATCTCTCTCAATACTGGCAATGATGACCTTTTGCCTCAAGACCATGATACCAATCACACGACGCCGAATTACGTTAATGATGTTCAACCAGTTGACGCTATTGATAGCGATTTTACGACAATTAATACCCACGATGGGGATAGTTTAATAAATAGGGATGAGGTCACAGATCAATTTCCACAGAATACAGAATTTCAGATTTCAAGTCCAATAGAGACACATATTAACCATGCTGTGCCATCCTTATCTTTATATTGCAGTATTGCTGCACCTAAATCTCGGCCTTTAGCCGACAGTTTTTCAGATTGTCGTAATTTTCATATAGACGAAAGTGATAATTCTCGTCAATATATGTCACAGAATCCTAATGATTCTCTTAATTCTGGAGCACCAGAATTCATTATAAGAGGGGGTGATGTTCCCCCAGATAAGGACAAGATCCCAGAAACACAGATTTCTAATTCGGCCCAAACCACACAGGAAGAACCCTGTCAAGTAGAAAATAGAGAGGACGTCACAATGATACCTATTCAGCTAACAAGTAACAAACCATGTGAGAGAGATAGTAACACAACAGAGACAGTGCAACAATCACAAGATAGTTTTCTGACAGAAGAACCTGACACACAATCGGTTTCTCATTCATTGCACATAGATGAATCAGACTCGTGTCAACCTACGCACAGCGATTTGCCAAATCCTGACCTAGTGGATGCACATGAGGTCACACCTGTTGGCAACTCTGTTGCTGTTACCTGCGAAACTGACGTCATACAAGACGTATATTCAATTGCTAGTATTCCACTGATCCATAAATCGAATAATCTATACATTAAAGGATTCCTGGAAGGTCTGCCTGTCCTTTGTCTTGTCGATACGGGTGCTAGCATAACCATTATTAATAGCACACTTTGGCGCTCCTCGCCTGAACTTTCTCATCTTTCACTGCTAATAAATGAAACAGACCTACAGGCTCGTACAGTAACGGGCGCTTCACTTAATATCCTGGGACGACTTGATGTAAATTTCCACTTTGGAAAGGAACGCTTTCCTTTCAAACCCTATGTTGTACAAGAATCAGTATACGACGTTATACTGGGGCGAGATTTTCTTCAATACTTCAACTCTCGAATCGATTTTAAGAATGGAACACTCGAGTTTCCCGCCCAGACTGGACCTATGGTTTGTCCACCTGGCCTTATAGACGAAGACGATGATAACAATTCATGCTCTGTCTTCTGCCTTAAGTCCTGTGTTCTACCACCACAGTCGGAGACTGTGTTTCCCGCTAAACTAAAAGATCCCTCTTGGGAAGGTTTTATCGGCGTTTTCGAGCCTTCATGGGGTCTTACCGATCGGTATGAGCTCTACGGAGCAGCCGAACTCGTGGTGGTTGCAGACAATGGCACGATACCTGTAAGGTTGCTGAATCCTACAAACAGTCCGATAAGAATTCACCGCCTTAGTACTCTGGGAGTGTTCCAAGCAGAAGATAAAGATATCTTTGCAGTTAATCTCGAAGAAACTCCAGACCAGCCCAAGCAACATACTTCTCCTTCACCAAGTCTTAATGACATAATTGATCTATCTTCATCCGATCTCGCAGAGGATCAGAAGCAACGACTGTTGGTCTTGCTCAGCTCCTACCGCGACATTTTTGCTATGACACCCAAAGAGTTGGAACGCACATCTATAGTGCAACATGTCATAGACACTGGGGAATCTACCCCTGTCCGCCTTAGACCTTACCGCACCTCTCCGATCCATAGACAAAAGATCGAGAAACAAATCGAGGAAATGCTCGACCAAGATGTCATACAGGAATCCATTTGTGTCGATCCACTCAATCGACCAATCGTCCCACTAGAGGACGACGACGAAGTTATTCCACACTTAATAGACGATGATTTGCCTCCAGACAGTTTTTCTCCTCCGACACCTCCAGTCTCAGACACCCTGCATGACATTAACGCACCTCAGCAGGGTACCGTTGACATTAATGCCCCGACAGTTAACCAGGCTCCACCGACAATTGAGACTGGCCCACAACCGGAGCTGACAGACAATACTGTCTTGGAAGCAAATCCCTCTAACAATGATCTAACAATGCTGCTCAATTCCCCGGATGTTTATATTGTCGATAAAATTCTACGCAAGCGTATTCGCGCAGGAAAGACGCAATATTTAGTAAAATGGAAAGATTACCCTGCATCGCAGAGTACTTGGGAACCCGAGGACAATATTCTCAATCCTCAGCTTATTGAATCCTTCAATAACACCAATCGTTCTTGTTCACAGGACAACTGA

Transcript

gene22082.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00077	RVP	Retroviral aspartyl protease	Domain	Interproscan
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR018061	Domain	Retropepsins	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR023779	Conserved_site	Chromo domain, conserved site	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR051219	Family	Heterochromatin-associated chromo domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22812	CHROMOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-