Detailed information of gene21513.t1 in Actinoscyphia liui Gene info
Gene IDAnnotationChromosomeStartEndStrand
gene21513.t1THROMBOSPONDINchr61016152510225620-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF12947EGF_3EGF domainDomainInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF13855LRR_8Leucine rich repeatRepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR003591RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR006558DomainLamG-like jellyroll foldInterproscan
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR024731DomainEGF domainInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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