Gene detail

Detailed information of gene19343.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene19343.t1	UNCHARACTERIZED	chr5	30864637	30874883	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene19343.t1

CGGAAACATCGTGCAAGAACTAATTGAAAACTTGTCTGAAGATTTTCTTGCTAGCAATGCATTCTATGCGTTAAACACACCCATTATAGGTTCGCGATAATCGTGCGTTACATGTAGGTGTCTTGTCGTAGGAATACTTTTTAAACTCGCCATGGAAGATGAAAATGTATCTGATGTTGTGTCTTGTTTGCAAAAACTAAAGTTGTGTGCTCGCTGTATTTTACGATTTGTTGATGAAAGGAAGTCTTCGTTGTATGAAGGAGAATACGAGGCAGTGTGTAAATATATGTGTGATAAGTATGGTGTAGAAGAAAACCAGGATAATGGTGTTATAATAAGTAGTGACGACAGCAGTATTGACCCATGTACAGCATGTTTAGGAATTCTACAGTCTTACAATGGTGTAGTAAAACAAATTGCAGATACTATTGAAAGTTCAGAGTTTGAATATGAAAGTTTTACATTCTCTGTGTCACTGCCACTATGCTGCTTGGTTAGACAGCATTCTATATTTTTGTATTTAAAAGAAAAATTCAGTGGAATGTACAGAAACAAAAAGTCAGTGGACAATCTTCCATCAATAAAAGAAGTAGTCAAGTGGGTGTGTGGACCAGCCCTCGGCATGTCACTGGGTGTCTTTTTCCAGCATGAGAGTTCATTCCAGATTTCTATTCATTTTGGGCATGACAAAGGGAATGAGGAGTTAGAGTTCCTGACAGAATTTGATCCATCGCAGTTCAAAGAAAGAAAAGCCAAGCGTCGGCAACCAAAGCCAGTCATGTTTTCTATAGCAACAGTAAAAAGAGCACTGGAGGAATTGGACACAGCCGACAAACTGAGAAAGTATACGTACTGTCCTCCCAAGATACCCAGCTACAAATGTGATTGTACTCAAGTTTCTTGCTCTCATTCTTCCATCTTGTTAGCAGGAAGGTACAACAAGTATTCAAGACGTCTTCCACAGACACCGTGGATAATAGATGGTGAGCGATTGTTAGAGTCATCTGTGCAGGAAAAGATCTGTGATGTCATCAAACTCAAGATTAAAGCTGATGACTATAAGTTCTCATCTGGTGGAAGGGAAGACATTGATGTCCACATGCTAGGAACAGGCCGTCCCTTTGTCATTGAGTGTATCAATCCCCGTAATAACATCCTGAGTCCTGAATTCCTGTCTGGCGTACAAAAAGAAATCAACTCTTCCACAACTGACGTGGCAATAAGAGATCTACAAGTTGTCACCAAAGAAGACTATGGAACACTAAAAGAGGCTGAAAGTACAAAGACCAAAACATACAGTTGTCTAGTTTGGACAGAGAAAGAAATTACAAAAGAAGATTTGCTACCATTAAATGATATCAAGGATTTAATATTAAAACAGAAAACACCTCTCAGAGTTCTACACAGGAGACCAGTAGCAGTACGTGACAAGGTTGTACATAACATGAGTTTTAAATGGATTGATGTCCATCACTTTAGGCTTTATCTCAAGACTATGGCTGGAACATATGTCAAAGAGTTTGTCCATGGTGACTTTGGTCGCACTAAACCTAATCTGGGAATACTCCTGGCAACACAGACGGACATCTTAGAGCTTGACGTAGAGTCAGTAGATGTTGATTGGCCGCCATCGCTTAGTTAACCAACAGCAGTTGCTGGGAGCGTTTCACACTGGTAGACATGTAACAACTCACTTCTTCATGACCAAGAGGTCAATCTATGGACGACAGCCAACCACCACGAGTCAATATCGTTTACCATTGAAATGCAGTTAACATCCTAATTATATCCATTTTGAAATCACTAGCGAATCCTGCAATCTGATTGGTTAAAATTAGTGCAATCAAATTATTAATTTCATCATTGTGGTCTCTAGCACGCAAGTTGAAAGATAGGCAAAAGGTAGAGTTTTGGTTTTGAAACAGCAAAAAGCATTGGTTGAATAATATTTCTAGCAAAGGATTTCAACATGGATAGAATTATGTGGTAATTAAATGGTCTGAAATCATGAGTGATTACAAAATTGTACGACCCCACTCAGTTCAATTACCATCATAATTATATAAAGAGATCCTGAATTACAGCACCTTCATAATTATGTGACCCAACTGAAAACTCCAGACGTCTAGATCTATTTTCACTTCCAGCCACTTTTCTCAACCAATCAATGGCCAGAGTTAGTAATTACCTTGATTGACATAAGTTAGAAATGCCAATCACGAACGTTTGAATGGTTTTGCATTGGTCACATCATTTTGAAAAGCACTGTAATTGCTATGGTTTATGTCCTAGCAGGATCCATGCATGTCAATGGTAAATGGATATACCATATTTACTCGATTAAGCACTGCCCTTGAATAAGCACCGCATCCATTCTCAATAATACATGTATATTGTTAATTGAAGTACTATCAGGCTATCTTGGATTATTTGAGGAACCAAACTAAAAAAGTATGACCATGCGACCAATATGACCATTGACGTTGATATGTTATACAAATAAGAGTTTTTTTTGCCACCAAGTAATCCTAAAAATGTGCCGATAAAGTGCCACGGCGCTTTATCGAGTAAATATGGTAAACTACAGTGTATGTTATGTATGTATAGATTTGTTTTGTACCCTTCCTTCAGTGAGGATATACTCTGGAAGCTTGGTGAAAACACAATTACTTTTACTAAATTCCTGTACTGATATAAGATATTTACAGTTAGGCTTAGTGTGAGTTTAAAATTTTTCACCAGTGCAAACCAGGCTTGCATACAGTGTATGGATATTTTCCTGCTATTTAAATGTAGACACTCTGATGTGAGGTGTGTCTAGTGGTTCTAACTGTGATAGTACTACATGTACTAATCTAATTTGTAAATTCCTATCTCAACATTATCAAATTTACAAAAAAATAATAAATTATTGTGGTATTTAAAGTCAGTGTCCAGAATCTTTAAAATAACTTCTTCTTGGAATTTTTATAGTTTAGAGGTATTAATCATTTTGTTCCTTGAAGAAAAATACTTTACTGGTCCAATGTCAATTGACAAACTAAAAAGTTTCATTTGATTTTGTAGTTTGTCTCTCATTAATTTGATTAAAACCCATTTAAAAAAAGTTAAGTTTTCTTGTAAGAATGATTAAGACTTTTGTCTAATAAACTGTCTCGTAGAGAAGGTTTTTTACCAGATTGTCTGGTTTTTCCTGGGCTTGTGTATCGGTCTGGTGTGCGTAACAATCGAGTGGTTCTCCGTGACGATGCTGGTGTTACAGATTTGGTTTTGCTGAAAAGAACAGCATCCGTCTCACTGGCTTCCATTCCTTTGTGAGTCAAAATGGCTGCTTGAAGACTTCCAACTTTACTTTGCAAAGCAGGAAGCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21237	Pus10_N_euk	Eukaryotic Pus10, N-terminal	Domain	Interproscan
PF21238	Pus10_C	Pus10, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR039894	Family	tRNA pseudouridine synthase Pus10-like	Interproscan
IPR048741	Domain	Pus10-like, C-terminal	Interproscan
IPR048742	Domain	Pus10, N-terminal, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21568	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0031119	Biological Process	tRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-