Gene detail

Detailed information of gene19261.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene19261.t1	SIGNAL RECOGNITION PARTICLE 72	chr5	30032937	30044836	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene19261.t1

ATGGCGGCCAACACGTCACCTTCGGTTCCTCAGTTGTTCACCGAATTAGAAAGATTAAAGAATGAAGGAAGCTATTCTAAGGCTCAGAAAATTGCTAACAAAATTTTGCAGGAGAAACCCAACGACCCCGATGCTTTCCACTGTAAAGTTGTATGTCTGATTCAACAGTCTTGTTTTCGCGAAGCTCTTGATAGTATCAACTCTGGATCAAAGAAAGAGATCAAAGAGTTACCATTTGAGAAGGCATACTGCATGTACAGACTGAACAGGACTGAAGAAGCATTACAAACACTCAACAACATCCCAGAACAGGGACAAAGAGAGAAGGAACTTACAGCCCAAGTGTATTATCGTCTTGGAGAGTATGAAATCTGCAGGGCCATCTACAAGGATTTGATTAAAAATTCCACGGATGATTATGAAGATGAACGAGAGACCAATCTATCAGCTGTGGTTGCTGCATCTTACCAATGGGGCAAAACAAAACTGTCTGAGAGTGGTCTACGTGAAGACACCTATGAGTTGTGCTACAATACAGCATGTTTGTCATTGGCAAAGAATGATTACACAACAGCAAAGAGCAAACTCTTGCAAGCTGAAGTTCTTTGTCGCAAGTCCCTTGAAGAAGATCCCGAAATTACAGAGGAAGATGTTGATGCTGAACTGGGTGTTCTAAGAACTCAACTTGGTTTCACCTATCAAATGCAAGGATCAAATGATGAGGCCATGAAGTTATACAATCAAGTATTAAAATCCAAACCTAATGACATTGCTCTGGCTGCTGTAGCATCAAACAATGTTATTACCCTGAATAAGGAAAGAGATTTATTTGACTCCAAGAAGAAGGTCAAGGCAACAATGGTTAACGGTCTACAAAATAAACTTACTGAACAACAAAACCAGCGATTACAGTTTAACCAATGTCTATTGTTACTCTACTCCCACCAGATGGATGCTTGCAGAACCTTGATAGCAACCCTGGAAGTGAAATATCCTGACAGTGACTTCCCCTGCTTGATGAGAGCTTCTTTACTGCACAGAGAAAAACAGTATGATAAAGCTATCAAGATGCTCAAGGAATACGCTCAAAATCACCCCAAAACATCTAAAAATGTTAAACTAACACTGGTACAGATGTGTCTTGTACAAGGAAACTTTGAATCAGCTTGTTCCACTCTGAGCTCCATAGAAGACCTATGCCACAGACCTGGAATAGTATCAGCTATAGTAACGCTATATACACATCTTGGTAGAGTTGATGTTGCCATCTCCATTCTTGACTCTGCTGTGAAATTTGCTCAAGAAAATAAGGGTGCTTTGAGCCAGTCTGAGATGATTAGTCTCATGCGCGAAAATGTTGCTTATAAATTATCACATGGCCGAGCTAAAGAAGCTGTGACAATGCTAGAAAGACTACACAGAGAAGATCCACGGAATATTAAGACTCTCGCACAGTTGATCACTGCTTACTCTCAAGTTAACCCTAAAGAAGCTGAAAAGTACAGTGAAAAGCTGCCTCCAATAGAACTAGACACTGACATAGACGTTGATTTACTGGAAGTCAGTCCTGGGATGAGGTTTGGTCGTCAGAAACGTACTGCAGAGGATATGTTGGGACAGGACAGTACTGATGTGATCATGAAAAAGAAGAGAAGAAAGAAGAAGAAAGGTAAACTTCCAAAGAACTACAACGCAGAGGTCGACCCTGATCCAGAACGTTGGTTACCTAAACGAGAACGATCTTACTACAAGGGCAAAAGACAGAAGAAGTTTGCAGTCGGTAAAGGAACGCAGGGATCAGCCGTTACAGGACAAGAATCACCAAAATCTCCCGGAAGCCCCAAAACTACAGCGGCCTCTCCACCAGGGACCCCTGGGGGTGCTACTGCCGCCGCCGCCTCGAACGTAGTCCCTCCCCGACAACAGCAACCACAGGCAGCCAAGAAAAAACAGCGCCCTAAAAAGAAAAAGGGAGGCTGGTAGAACGTCTTGAATAACTCATAGTAGTCGAATATTAAATTCAAATAAAACTATTGTAATGTCATTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08492	SRP72	SRP72 RNA-binding domain	Domain	Interproscan
PF13174	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF17004	SRP_TPR_like	Putative TPR-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013699	Domain	Signal recognition particle, SRP72 subunit, RNA-binding	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR026270	Family	Signal recognition particle, SRP72 subunit	Interproscan
IPR031545	Repeat	Signal recognition particle subunit SRP72, TPR-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14094	SIGNAL RECOGNITION PARTICLE 72	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0048500	Cellular Component	signal recognition particle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-