Gene detail

Detailed information of gene16965.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene16965.t1	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	chr4	54078629	54083974	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene16965.t1

ATGGCTGCAGAAAAAAGTCTAGGTGAAATTGCCGCTGCAGATGGAAATCTCAATTGGGAAGACAAAGAGTACTCTTCTCCACGACCAATGAATAGAACCCAGATAACCTACAGCGAACAGATGGAATTGCACCAACTGGAAATGGAGAGGTTAGAGCTACAGAGACAGGTAAGCAGGGAAAGAATGGAAATGTTAGAAATGGAGAGAAAGTTGAAATATGAAGAAGGAGAAGCACTGGGTAAAAGCTCAAGTCATTCGTTTCCTATATTCAGTAATAAGGTGTCATTGCTTAAAATAAGGGAAATGCGCGAAAATGAGGAAATAGATGATTTTTTACGAGTATTTGAGTTTACTGCTAGAGCTCAGTCTATACCAAAGAAAGACTGGCTTGCGAGTTTGATTCCAAAACTTACTGAGAAAGCGAAATCAGTGTATCTAGAAATGTCAGAGGCACAAGCAGAGAGTTATGACTTAGTCAAAAGAGCCATTTTGAAGTCATATCAGTTGACTGCTGATCATTATAGATTTAAGTTTAGGACATCCGAGAAGTTAACTGGTGAAGATTTTGGTCAGTGGGCTAAAAGAACTCGACGTTATCTGGATAGATGGATGTCGTTTGCTGAAGCAGATAATGAAGACTCAATCTTGGAGCAAATAACCATGGAAAGACTAATGGATGGCGTTGGTCAGGAGCTAAGAAGCTGGCTAAAAGAACGCAAACCTAAAACAGCTGAAGAACTGGCAGATCTCGCGAATACTCATGTTCAAGCACGGAAAGGTCCTCTCGTAGAAGGTAAGTATGCTGGGTTCAGGTATGACAGATCTAACAGGTTTAAACTGACATCTAGATCCGGGGATGCGTCAGCGGAAACCCGTAAAAACGTAGAGACTACAACCCAAGTGCAAAGGAAGCCAACTTTAGATCGAAATACACCCGAACTAAGGCAAACCTCTGTAGAGAAATCTCAGGATCTGTCAAAGATTCAGTGCTATAGTTGCAAGCAAATGGGACATTACTCCAGAAAGTGCCGTAGTAAGAACAGAACAGATTATAGAAGCCCAAGTTTGTTGTCATCAACTCCCTTAGACCCCAGTGACAAAATATTAAAATTTTCTATTGCTGGGAAAATTAATGGACAGGAGGCTAAAATGATTGTAGATACAGGATGTTCAAGAACCTTAGTTCACAAGAGATTTATCGACGAGGAAGTTGAACCACGTGGTGAGATAACAGTACTTACAGCTACTGGAGAACGGATTGTTGTTCCCTTGGTGCATGTTGAAATTATCAGTAAAAGGGGCAGATGCAAGGAATTAGTAGGGATTACTGCAGATAGTGGTAAGGATGTACCTGATGACGCATTTGTTGTAACACGCAGACAAGCTATTTTAAAAGCTGCGCAAGAAAGAGCTGATAAGTTAGCGGATAGAGAAAATTTGGTGGCTTCAAAGACCTTAGCTTTCCCGGAAAAGAAAATGGAAACGCGTCGGTTAGTCGATGAACCACATTTAGAAGGTCTTTTTGATGAAGAGCCTAAGCTGAAACGAACTGGTTCAAAACCGTCAGCAGAAAATTCAGATATTATAGAAGAAACCAGAAATGACAATCCCAAGAGTGATGTGTTAACTAATATTTTGGATAGAAATCGTCAGCAGGTAATTAAAGATCAACAGTCAGATGTCACCTTAACCAAAGTTCGTAACATGGCTTGTGAGAGTCCTCCAGAGAATAATTTAGGTGGGTTTTACTATGACAAAGGGTATATTGATGATATTGTAGTAAGTACGGAACAAAATTTCCAACAGCATTTAGGGCAACTGAAAACGGTGCTACAACGACTACGATCTCACAAATTACTGGCTTCAAAATGCAAAGTTGGAATGACAGAAGTTAATTTCCTTGGGCACAGAGTCGGAGGAGGGGCCATTAAACCTAAGTCAGCAACAATAGAAGCAATCAACAGATTTCCGAGACCAAGCACTAAGAAAGAGGTCAGATCGTTTTTAGGGTTGGTTGGTTATTATCGCAAATTTATACCTAATTTTTTACACGAAGCTGTTGCTCTTACAGACTTAACCAGAGGAAGCCAACCAACGAAGGTAATATGGTCGGATCAATGTGAAATTGCCTTTCTGAAATTGAAACAGGCAATACAAAACCCTCCAGTTCTGCGACCCCCAAAATGGGAAAAAAAATTCTATTTGCAGGTTGACGCATCTAACAGGGGCCTTGGTGGAATCCTTTGCCAGAAAGATGAGAATAATGAAGAACATCCCATTGCGTTTATCAGTAGAAAACTAATGCCCAGAGAAGAAAAGCTAAGTACTACCGAGAAAGAGTGCTTGGGTATTGTCTGGATTCGTGGAAAGACAAACAGAGCTAGAATTCAGTACGGAAAGCCAAAGACCCAGAAGACACGTGGAAGCGAAGTACGACAACGGACAGAGAGAGGACAAAGGCTTGATAGGAAGGACAGAAGACTTGACTACAGAAAGAACAGAAGAAAGCTTACCAGAAAGACCGAAGGTTTGACCACAGAAAGAACAGAAGAAAGCTCGTCAGAAAGACCGAAGAATGACGTTGTGCAGCAGCTCTTCGCTCGCATCCAAACTCTAGAAGATGCCCAGACCCCAGACCTCCCTTCCCATTTGCAGAAGATCACCCAATACGGCTTTCCACGTGAAGAGGACTTTAACAAGTATGAAGCTTTGGCTATGGCCGAGCTCCTGGCTGCAACCGCCAAGATCAGCAAGAACGAAAAGGCCTCTGTGTACGATGCGGTTTCTTCAACTCTGCGTGAAAAACTTCACGTCCCCAAGAAGCAGTTCAAGGCTTACTTTGTCGCCCTTTTGGCGGATAAAGAATACGCAAAAGTTCTCGACACCGTATCCAAGGTCGACAAACTGTTCAAACCCACCCAGCGTTCTGAAGCCTCCTCGTCCACTCCCCGGCCTCGCTCGCAGATCACGTGTTATTCCTGTGGTTCTCCCGGACACATTGCTTCCAGATGTGTGAGGAGAAATGCACGCCCCTACCCCTCTCCTCGTCGCCTCATGGGACAGCGGAAGTAA

Transcript

gene16965.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF02023	SCAN	SCAN domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003309	Domain	SCAN domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-