Gene detail

Detailed information of gene15504.t3 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene15504.t3	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	chr4	31908741	31917403	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene15504.t3

ATGATGCTGATGATTCCATTTGGAAATTCATTTACTTTGGGCTACCTGTGTGGAAACCACGCAAATCTTAGTGATTCTGGGGTTCCTGTGGTAAAGAACACAGGAAACCCAAAAGTTCGACGATCGAGAAACAGACAAAATGGTTACAGAATCAGGCAGCAACTTAGCGCTTCTTGTACGGCGTATTTTATGACAAATCCAGACGCCATGAAACCTATAAAGACTGGGTTATTTGTTGGGACGAGAAAAGACGCAGAGGATCGTGAGAATTTGATGAAATATTCCATTGTACGAGTGTTAACCGTGGACAGTCAACCACTTGATGAGGAGTACATGAGTTATTACGGTCTAAAAACCCTTTATATAAACTGTCTAGATGAGCCTACTGCTGACCTACTTACATCGTTTGATAGATGTATTCAGTTTATTGACGAGGGACTAGCAAACGATGAAGCAGTGCTTGTACACTGTCTTTCAGGAGTGTCTCGCAGTGTTACCATCATACTGGCATGCTTGATGAAAACAGATTATTTGACTCTAGATGAAGCTATTAGCAAACTCAATCAAATTTACTCCCCAGAAAAAGTAAGTCCAAACACTGGTTTCATGGATCAGCTGAAGCTTTATGAAGAAATGGACAGATCTGTAGATACATCTAGTGCCGTCTTTAAGCAGTTCAGACTTGAGTTACTTGCCAGCCAAATACAAGATGGCAGTCACTCAGATGGTAGCGTGTTATCAAGATTCCTTGAAGAAGTCAAATCTAGAAATACCTCAAGTGACAAACTCTTTAAGTGTAGAAAATGCAGGTATAAAGTATTTGACTCCAGTAGCCTTGTTGGGCATGAAAAAGGACAAGGGCCACCATCATTTGGTTGGAATAAAGAAAGAAGAAGTGTCCAACATGGTAGCCCAGATAATGTAGAATGTACATCTTTATTTATTGAGCCAGTTGAATGGATGTCATCAGTAATGCTTCTAGGGACTTTGGATGGAAAGCTACTGTGTCCCAAGTGTAGTTGCAGATTAGGTTCTTTTAATTGGTCAGGAATGCAGTGTTCCTGTGCATCATGGGTAACTCCGGCTTTTCAGTTCCACAGAAACAAATTAGATCAGATAAATCAACAGCAAAAGATTTCGACCCCAATGTTTATGGTGCCAAACCACGCCCCGTGCACATGGACTGCACCTATTATCAGCAACCAGCCAGGTTATCTTGTATATTCTGCACCGGTACAAGATACCATTAACTTCTTTGTTGACTGCCTCAAAATCGTTGAGGATATACGCCAAGAGGAGCCAGAAGCCTATCACCTGCTGAGAAACAGTCCTGTTCGCATTGGCAGATGGAGGTTGGCCGTCCAAGAAGAGTGCCCTACGGAAGATCACCACATGTATCAGTCTGAGAGAGTTGTGAAGAGAGAGCTCATCCAGTATGACCGAGACGAGCTTCGACTGATGTTCTCAATCAATCGAACGGCATCTCAGGGTTCGACATGGACTGTTTCAAAGACCAAAAATACATACAGTGATACTACGAGGCGTTCAAGTTCCTTGCCGGGGATGGTGCAATCTCGCTCGTCTAACACGTACAGTATAGCCAGGTTTGACGTACTGAGAGATCTAGGCCTATGCAAAATGGACATCACTCTGCAGAACGACGTCAATTCTGGGCACAATGTGATTCTTTCAATGTTCCACGGGATGTGGCAGAACCGTTGCTTGAGTCTTGTTGTTGGATTCAAGATTCCTGAGCTGCTGTGCAACACCGAGGAACCTTCTGTCACCATCGAAGACATCGCCTTGAACATAGGATGCTCGTCAAGCAAGCAGCTCTATACCATCATGCGAGTGCTTACTCAGTGGGGTATTGGTGTAGAACTGGAGGGCAAGCGTTTCACCAAGAACCATGCCATGGAACTGTTGAGACGAGACAAAGGTTCAAGCCTTGGCCACTTGGTGGACTACTTTTGTAGTGACGAGCATTTGACAGCGATGAGATCTCTGCCCAAATGTGTGAGGCAAGACAAGCCAGCATTTATCCTGGAACATGGGATGAATCACTTTGAATACATGAATGAAGTGGACACCCGGTCTTACGACACTGGGAAAATGTTTGAAGGTGTATCTACGCATCCCATTGGTAGTGCTGAGCGGAGGAGAGAGTTTGCTGCGAATTATCAGATTGCAATGGAGTCTTTTACTAACTTGGAAATCTTTCCAGATGCCCAAGGGGTCAACACAGTGTACAAGTGTTTCCCGTGGTCGACTTGTAGCACTCTGGCCGACTTGGGTGGTTGTTCAGGCCACTTTCTTGCATCCATTCTGAAAGAGCCCCACTGCCAGCACATCCAAGGGTACGTGGTGGACCTACCAGACGTCATTGACGAGGCACAGAGAAATGTCCAAAGCCTTGGCATTCCAGAGCACCGCGTTCACTTTGTGAAACATAACGTAATCGAGTCTTCTCTGAGCAACTTAAAGCTACAAGCTGACACAGTGATGTGCAAGAATTTCATAGGCATGTTTTGGGAAGACCAAGAAAGATTCGCCAAGATTCTCCACAATTCCCGAAGCGTTTTCACTGAAGATAGTAGTGGCAGACTGCTTATCATCGAGCCTTGTCCTTCTGATGTTGGTGACATGAATCATAATTTTGGGGTGAATGGATTGCAGCATGGGTTTATCAGCGTACACGTTGCTAATATCAGCTGTACTAGATACTATTCCAAAAGCGAGTGGGTTGAGCGTCTCCAAGACATTGGCCCCAAATCAGGCTACCAATTAAGTCAAGTATACGATACATTTCCTGGGGGATACAACATATTTGAACTCTCGACCGTTTAA

Transcript

gene15504.t3

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan
PF00891	Methyltransf_2	O-methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR001077	Domain	O-methyltransferase domain	Interproscan
IPR016461	Family	O-methyltransferase COMT-type	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45848	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0008138	Molecular Function	protein tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008171	Molecular Function	O-methyltransferase activity	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-