Gene detail

Detailed information of gene12540.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene12540.t1	POLY A POLYMERASE CID PAP -RELATED	chr3	51708577	51716103	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene12540.t1

ATGAGTGAGAACAAAGTAGGCGAATTTAAATCGTCTGTTCAAGTCTTCTGTGAAGTCTGCGATGTCTATGTCTCGTCTGCTGCACTTCTTTCAACTCACATCAAGGGTAAAAAGCACCAACAGCTTATAAAAGTGAAAGAGGAACAAGAACAAGCGAGTAGACTAAGCTTGTATATTACAGGATTGAAATGCTCTGAGACAAGTGAAGATGAAATGAGTTCGTTCTTTAGTGTGTATGGACCAGTGAAGAGAATCTATTTTGATAAAAACAAGGGGGTGTTTGCTATTGTAGAGTTTGAAAATGAAGAAAGTGCAGCAGCATTGTTAGCTACAACAGAACCAGTTGTCTTCAAAGGAAAAACATTGAAAATAAAGAAAAGAACTTTTGCACATTCGAAATCTCATTCTTTGTCAGAGAAACCCAGTGATCTTACTGCTTCTAATTCAAAGAAAAGAAAGAAAAGGCATTCTAGTGAAACAGTGTCTTTATTGCCAAATGAAGTCTTAAACAAGATGAATGTACTTCCTACAGTTTCCCAACAAATGGATGTCCTCATCAAAGAACTAAAACTGACAAAAGAAGATCTTCATTTACGATCACTAATCTGTGACATTTTGAAAGAGGTTTTCCGAGAATTTTTTCCGTCTTGTGAAGTGGTTTTGTTTGGTTCATCAGCTAATGGCTTGGGTTGTAAAGGTTCTGATCTAGACATAACTCTACTCATAAATACTGACAGTGTAACATGGAACATTGACTTGGAGGGATTCATGAAGGAAACTCAAAATGAGGGCACTACAGGAAAGGAATGTAAAAGATCCAAGGATTTACACAGTTTTGTTGTCAAGGTGATGAGAGACCTGGTACCTGGATGTTCCAATGTAATTCCAATATACTCTGCTAAATGTCCTGTGATAAAGTTTACACATCAAACTAGTGGAATATCATGTGATTTGACAATCAATAACAGACTTGGTCTTCAAAATACAAACCTTATAAAGTGCTACATGGAACTGGACCCCAGGATCTCACAGCTTGTGTATACTGTTAGGGCCTGGGCTAGAGTAGCAGGCTTGTCAGGGGGAGGAAGTGGTCAACTAACAAGCTATGCCCTGACATTGATGGTCCTTTACTTCCTTCAAACCGCTAACCCCCCTGTAATTCCCTCCTTGCAAAATGTTTCTTTGTGGCCAGTCAAAGATAAAAAAGAGCTTTATGTAGACAAGCAGTTGGTTGATGGATGGGAATGTGGATTTTACAGCAATGTTTCTAACCTTGCCTCAAGTTTAAATACAAAACCAGTGGAACAACTTCTTGAAGAATTCTTTGACTACTATGGCAGCAAATTTGATTATGGAAACTGTGCAGTGAACATCAGAAAAGGAGAGAATTGTACTATTGCTTCCTTGGAAAGTGAATTACAAGAAATCCATGCAAAAAATCATGGTTCACAACAAGAATGTGCAGAGTCTTCAGACAATAACACAGTCTGGAAGACGACTCTTTTATGTGTCCAGGACCCTTTTGAACTCACTCACAATCTTACCCAAAATGTGGGAATTACAGCACATAGACACATCATTCAATCTATGATGGAAGGCCGAAAACTGTGCAGCACATTTTCATTAGTTGGCCAACTCAATGAATCAGAGAGTGTCAAAGGCATTGTTAGTCTTCTGAAGTATCACCTTAAAGCATCAAAAAGGCACAAAAAAGGAGGCTACAGTTTTAATGTTTGTCTATCAGAAAAACCAGAGAGCTCCTTCAGTGGGATAGTGTTATCAAGTTTTTCTTCTTCAAAGAGCTTTTTTGAAGGCATCTGTCTCTATCTGGAATCCAAACTCAAGATAAAGTGCAGTGTGAGCAATGGTTGTAAAGAGATCAATCCAGATAGCAGCTTTAGTGCTATGTGTAGAGCTCCAGTTAACACTTGGACCCATTGCAGAAGAGAACGCAGAAGGCATAAGGATACGAGCACCATCATAAGCAGTGATACAGCTACACAAAATGACCCCCATTTATCAGAAGCAAGTGGCTTTGGTGAGTGTTCAAAAGAGAAGGAATCTACTGCTGATCAAGGATCTGATGAAGACAAATATGAAGATAATCCATTGCTTGTCTTCAATTTAGCCATTGATGAGAAGGCCTCCAGAAGTAATGGTGTGGAGTGTGTTGTTAAACTGGAACATCTCGGAGGACAAGGACTTCAAACATTTGAAAACTTTTATGCCTTTTTCAAAAAGCAAATTACGACAGCTTTTCCATGA

Transcript

gene12540.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01909	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF03828	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan
PF12171	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002058	Domain	PAP/25A-associated	Interproscan
IPR002934	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR022755	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123	Biological Process	RNA 3'-end processing	Interproscan
GO:1990817	Molecular Function	poly(A) RNA polymerase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-