Gene detail

Detailed information of gene11358.t2 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene11358.t2	-	chr3	33707566	33709573	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene11358.t2

CTGATCTATCAAAGTGCAAAACAAAGGTTTGCTTCAGGCATCCAGTTAGAAAAAAGTACCAATGAGAAAAGAGAATGTTACATTGTGGTCACTAAAGTAGACGAGGATGAAAAGAAAAAGTTTGAAGAAAAGAAGCAACTGAAGGAGAAGGAAGTCATTGAAAGTGCTGTTGGTTTTTCCACGGTAATGAAAATGCTCTCGCAATCTGGCAAGCTTGTGGTTGGTCATAATATGCTTCTTGATTTGATGCATATAGTCCATCAGTTTTATTGTGCCCTTCCTGAAGAAGTTGATGAATTCAAAGCAACCATTCAAGCCTTGTATCCAAGGATTGTTGACACCAAAGTCATGGCAACGACACAACCATTCAGAGATCACCTACCCTCCACTGTCTTAGGGGACTTGGTGAAACACCTCTCTGTTCCACCATTCAAGAAGCCTGCAGTTGAACTGGATCAGGAATTTTCTAGATATAAAGAAGGAAGTGAGAACCTCCATGAAGGCGCATATGATGCCTACATCACTGGAATGTCGTTTATTTCTATGGCCAACTACCTCGGCTGTTTCCAAGATCCACCAAAGTCAAGGATTTCCCCCGACTCAACACTGGTGTCTCCATTTGTTAACAAGATCTTTTTAATGAGAATGGAAGATATTCCATACCTGAACCTTGCTGGTGAAGACTTGACGCCATCTAGAGATCATGTGTTCTTTCTTACATTTCCAATTACCTGGAAATATAGCAACATCCTTGATTTGTTTAGCCCATTTGGCTTTGTCTATGTCTCCTGGGTTAATGATGAATCAGCCTTTGTCTCGCTTGCAATAAGGGGCAACAAAAATAAAGTTTTGGAAGCTATGGATGTTGAAGATGCTCCATACACAATAATGTCATATGCTGATTATTTTGGTTACCCAAGCCACGAAGTGCAACCTGACAACCCACAGGACTATGGCATTGGAAGTAAGAGGCATAGAGGTCAGGAAGAAAGTTGTTCACCAGAAAACAAGACAACACCAAATACTGAGGTCAAGGTAGATTTCAATGAATATGAAGAGGGAGAAATCATTGAAGAAGCCATGGAACCAGTGTCCAAGAAAAAGAAGATAGACAAAACCTTTGAGGAACCAGATGAATGGTAATGCTCATCACGTCAAACTGACTGTCTATTTGAGTTGTGATTGAGTAAATGAAGGCCTACCTAGTGCAGTGTTTGGGCTTTAATTTTAAGCTATTAATGCTTAATGAAAAACAAGGTTAACATACTTTGTGTTATTAAAAAATGTGTAATTTCTGTACAAAATAGGGTTGTCATGGCTTGTTATGAAAGTTTCATTCATGTTGTAAAATTATGTAATGATATTTCTAATATGAGTGACATTATATTATTTATTATATGAAATAGTAGACTAATCAAGACATCAATAGACCTTATTTCCATTGTTATAATGTACATACGGTGTATACTTATTTCAGTAAAATTATTCAATGTTATAAACATTGATAAGGATTGTGGGAAATATGAGTTTTGTAATGATAAATGGGAACAATTTGGCTTTATCAATTTATTTCATAAATTCCTCTGACCATGAAAGCTCCCATGATCCTCATCTATCTCACCTTTGAGCCTTCCTTTACTAATATTATTAAAATACATCTATATTTGACTACACATAAACTAATAAGTTTCTGAAGGATGGGTTGTGTAAAATATCATTTTTGCAGAACAAAAACTATTAATTAAGATTATTTACTAAGTTATGATACTACTTAGTTCAATCTTGTGGAATGGAATTCTGCTAACACCAAACAATGGTAAAAAAAACTGATGAAATATCTCCATCTTTGGATGGATTTCAAATATATCATGAGTTACATAATAAAATGTAAAGTTGTAGAAGAGAATCTCTTAGTAAAACTATAACCTGATCCTGTTTGAACCTAGGATTGACCACCTAGGATTACTACATTAAAAGAAATACTGGTCAGACTGCTCTTGAACATTCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08675	RNA_bind	RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014789	Domain	Poly(A)-specific ribonuclease, RNA-binding	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004535	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-