Gene detail

Detailed information of gene07047.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene07047.t1	ACYL-COA DEHYDROGENASE	chr2	41635079	41655595	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene07047.t1

ATGGATTCTATTTGGAGTTTGTTGTGGTATTTGTTATGGATGGAAGTAGTGTTATCATTACCAGCTGGTAAAAACATTACGTTAACACAATTATTTTCCATCCAACTCGCTGACCTACCTGACGTCGAGCAGAACTTCAAACGGAAGTACAGTGACATTGGAATCGATGCACAACAAGGCTCAGCCTCACTCGGTCAAAATGTGACGATGTTTCGATTGCATAGGCCTGGGTACCAGCACGTGGCTAGGAGCGTTGCCCTGGAGTCTAACGTTCATCCTGGGTTATTTTTGAGATACAAAAACTATAAGTTTCATCTGGAGAAAGCTAATCCAACCGGGTTATTTGAAAAAGACGCTACTTTTCTTGAACGCAATCCATTTGGTCCTAACACCATCGCTTTAGAACTCTTTACGCATCCTGGTTGGTTTGTTTGCCACGACACATCCAAACCATTTACTCTAAAGGCAGCGTCCAAGGTGTTTCGTAGCAAGGAATTTGATCAGAAGTGTGTTTATCGCCAAGTTATTCGCAAATACTCAAGTCAGATCGCAGCAGAAAAAAATAATGATAAAGAGATGGAAGAACTAAAAGCTGCGCAAATTTTAGACAGTCTTGTGTCAAAGGAGTCTCTTGGTAAAATTCTAGGCATCACAAATATGCAACAGAAAACAAAACCTGTTATCAAGGTATCAGCAGTTGGAAGTCCAGAAACAGTTCTGCCATTTACAACCCAAACTGATTCGTTCCTTAAAAAGGATTTGACTGTCCCACTGGCTGTGACCAATCCCCAAACCTTTGGTCCACTCATGCCCCAAGGTCATATCGTCCCTCAAATAAAGGCCCCGCCAATAAAGACCCAAGGGCAAAACCCCTCTGTTATCAGGAACGCTTATCAAAGTAGCCGGCACATCAACGGCTACACAGCAGCCGCAAACAGAATAAAGTACTTCAATAATTTACGACGAAAAAGTACGTCTATGAGAACTTTTCCCCGTATGCAATATACCGGATACGTATCCGGCATTAGAAACCAACACAGCGTGTACCGAATACCTTACAGTACTCGACGTCCAATGTTCCAGTATACAAACAAAATGAATTACGCGACGAACTTGGGAAGAGGTAGTCACTTGGGAGTAGGAAGAGGCTCGCTGCTAAAGCCTGGTTATATGAGACCTGGTAAGGTGATTACTATGGAACGGCAGCCACAGCCTTACCGATACCCCGTTGATAGCATGACGCATCTACCCAAAGCACCATCGTTCAACTTTGCAGCAGTTAATAATCTTCAACCTACGTCACAAAAAGCTCAGCCAATCTCGACTAAGAGTATCAGTCACGTGACATCTAGTGTAGTAGGCGGAAAAGCCCAGCCAATCTCGACTATGGGTACCAGTCACGTGACATCTAGTGTAGTAGGCGGTAAAGCTCAGCCAATCTCGACTATGGGTATCAGTCACGTGATATCTGGTGTAGTAGGCAGAAAAGCTCAGCCAATCACGACTAAGGGTATTAGTCACGTGACATCTGGTGTAATAAGTGGAACAGGTCATCCAATCACAAGTGAGGGTAATAGTCACGTGACACCTAGCGTTAGTTCAGGTTCAGGGGAGGTGCCCACTAGTGGTAAAGAACCAAAGACTATTGATCCCAAAACTGCTGTGTATGGACTAGGAGATAAATGTATCAGCATCCGATTTTACAACAAGATTCGTAAACCAGTGAAAATCATATCCAGTATGAAACGGGCAGGATACCTCGTGACAGCAGAGACCTTTAAACTCAAGACAATATTCAAACATGCGCGAAAGGATCGAAAAGTTCATTTCTACGCACAGGATTTGAATGACAAGGAGGATGTACAGCTCAACAACAACAACGTGGTGACAGTGATTCCTGGTCCTTGTGATTTACCTTATAGAAGTATCTACTTATCACGGAACGGCCAGTACACCAATAAAGATATTGAAAGCTTCTTAAAGACTGAAGAACAAAAAATATCTTTAGAGCAAATGAAGAAATCCAACAGTAACCCCAGTCCCCAGGGTGGCTTCAGTCAGTGGTCTGAATTTGGTCCGTGTAGTGCGTCTTGTGGGACTGGGCTCCAGAAAAGAAGTCGAAAATGCTTGCCGAACCGAGCGTGCCTGGGAACAACTAAAGAATCACGTGCTTGTATTCTTGTACCGTGTGCTGAACCCAACTGCATACAAACATTTGGTGGTAATGTTGACATTGGAAAGTGTTGTGCAATACCCTTTATATATCAAGACACCGTCTACGATAAGTGTATTACGCATGCGCGAACGGGAGGACTGTGGTGCGCAACAACGCCTAATTATGATACTGAGAAATTATGGGGTTTTTGTAAAATGACAGCGAGACGAAGCAACATGGTATACAGACCACCAGGACATATTTCATTACCAGCCCCCCACATCTCGTACAGGGCCTTTCTACACCGCAATCAGCAAGGAACAGGTTATTTTGAAGAAAATATTTGTGACATTGAATATTCTTCTCTAATGTATCGTCTCTCTGCACAATATTTGCCAAAAACAACATCTGTTTTCAAGACAACAGAACAGTTTGTAAATGGAAGGTATTTTAGTATAAAATGCAGTTTATCCAGAGCTACAAACCAACAAGATATAGGGACAAGCAGCCAAGTTGTTGATGGCAAATATGATAGCTACCCTTGCGCTGGTTCTCGTCGAGGTACATTCTTTCAACAACCACCGACACTTGGAAATCAGTTCACCAGAGATTCTCATTTAAGAGCTTCTATTAAGAGGGTTCTCCCTAAAGAGGTTCTTAATGAGATCACCCCAGACCTAGAGCGATTTGGACAAAGAGTAAGTACTGATATCAATGATCTGGGATTGGAATGTGAGAGAAACCCACCAACTGTGGATCATTTTGATGCCTGGGGACAACGTATCGATCAAATCAACACATGCCAAGCGTGGAAACAGCTACACGATGTGTCAGCTCAAGAAGGCTTGATAGCCACTGCTTATCAAAGGAATTATCAACAATGGAGTCGTATCTATCAGGTTGTTAAGCTGTACCTGTTTTCATCATCATCAGGATTATACTCCTGTCCATTAGCTATGACTGATGGGGCAGCAAAGACTATTGAGACATGCAAGCTCACAGAGAAGATATTCCAGAATGCATACAACAGACTAACAAGCACTGACCCTGCGCTATTCTGGACATCAGGACAATGGATGACTGAACGACAAGGTGGCTCTGATGTAGCAAATGGAACAGAAACAGTAGCCATTCGTCATGGTGATGGTACCTACAGACTGTATGGATATAAATGGTTCAGTTCTGCTACTGATGCAGACATGAGTTTAACATTAGCAAGAATACAACAACCTGATGGATCATTCATTCCAGGTTCAAAAGGACTGACAATGTTCTACATAGAGACAAGAAATCAGGATGGCAAACTGAACAACATCGAAGTGCAAAGAATGAAGAACAAACTTGGCACCAGGCAACTACCCACTGCAGAGCTTCTGCTGGATGGTACAGTAGCTCATAAGATAACTGACGATGGGCGTGGTGTTGCTGGTATCGCCAATATGCTGACCATCACTCGTATTCACAACAGTATATCAGCAGTTGCTGCCATGAGAAGGATCCTTAGTCTAGCACAGGATTACTGCTTAAGGAGATCAGTGTTTGGAAAATTGTTGATTGACCATCCACTGCATATGCAAACTCTGGCAAGACTAGAGGTTGAGGTCCGTGGAAGCTTCCTTCTTGTTATTGAACTGAGTCGACTGCTTGGCTTAGATGATTGTCAAATGGCAAACGATGAGCAGCTAAACTTATTAAGATTGTTGACACCCATTTCTAAGCTGTATACTGCTAAACAGGCAATGGTCGTAACGTCAGAGGGTCTTGAGAGTTTTGGTGGCCAGGGTTACATAGAAGACACAGGTCTACCTGGAATCATGAGGGATGCACAAGTGTTGCCAATATGGGAAGGTACTACAAACGTGTTGTCAATGGATGTTCTCAGATCAATATACAAGACTCAGGGTCAGGTGCTTCGTGCATTCCAATCGTCAGTACTGTCCAAGACATCTATGGCAGAAAACCACGTTTCACTGAAGTCCTCTTGTGAAGCTGTTCATAATGCGCTGTCCATGTTGATGTCTCCTAATAACATGGAAACCTTGTCCCAACCCATAGCAGCACGTGATCTAGCCTACTCCTTGGCCAGGGTATATATTGGTGCATTGTTTATTGAGCATGCAAGCTGGGAGGAAGCTACTCAATTGGATATTGAAGCTGCTAGAAGATGGTGCCAACAAGATTTGACTCCAGTTTTGACGAACCTTAACCAAGGTGTCTATGACAGTAGTAGTTGCCAGTTGGACACTGGTTTAGTCATGGACGGACACCCACAATACAACAAAGTTTAA

Transcript

gene07047.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00040	fn2	Fibronectin type II domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF05270	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan
PF18158	AidB_N	Adaptive response protein AidB N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000562	Domain	Fibronectin type II domain	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR007934	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR036195	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036943	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR041504	Domain	Adaptive response protein AidB, N-terminal	Interproscan
IPR052904	Family	Acyl-CoA dehydrogenase-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42707	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0046373	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-