Gene detail

Detailed information of gene06398.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene06398.t1	RNA-BINDING MOTIF PROTEIN 14B	chr2	33408345	33418396	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene06398.t1

ATGTCTCGACTAATTGTCAAGAACCTCCCAAAGGACATCAAAGAGGACCGTTTTCGATCAGTTTTCTCCTCTAAGGGTGAGATCACAGACGTTCGACTTTGCACAACTCAAGAAGGCAAGTTTCGTAGATTCGGGTTCGTAGGGTTTAAAACTGTAGAAGAAGCCGAGAATGCTATGAAGTACTTCAATGACTCGTATATAGACACATGTAGGATTCAAATCGAAGTGGCCAGAAATCTTGGCGAAAAGACTGCCTCTCGACCTTGGAGCAGATATTCCGAAGGTAGTTCTGCTTATCAGAAAATTGCTCGTGAGAAAAGCGAGCGATCAAAGAAAGAGAAAGATGACTGTTTAGTTAAGATAAACGACACCGAAGAAAGCAAATCTTTGAAGAAAAAAGACAAGAAAAAGAAGGAGAAAAAGGATTTGCAAAATGAATTGAATGAAATGGAACAAGACCCAGAATTTGTGGAATTTCTACAAGCACATGAACATCGCAATAAGAAGTCACTTTGTAGTAACGATAGTGTGGTCTTGTCCAGTAATCGCCAAGATACTGCTAATCAGAAATGTGAAAATACTATAGGCGGTAAAGAATCTGTTTCCTCCACTGAGGAACACATTGATGATGTTGATGATGAATCAGCATTAGACAAAGGTGACAGCGACCATGAAGAAAATACCAAATTATCCAAAAATGCTACTAACCTCTCAGACATGGACTATTTAAAATCAAAAATAGTTTCCAAAGGTGATGATGTTGAGGACAAAAATTCAGATAAGTCTGACAAAGATGATGACAGCTCATCTGATGAAAGTGAATCTAATGATGATGAGTCTGAAAGCGAAGAAACTCACCCAACACCTGGCATTTCAAAACAGAATTCAGAACCTGTACAGTCGCAGTGGACAATCAAGATGAGAGGCCTCCCTTTTAAAGCTAAGGATAAACACATCGTAGAATTCTTTTCTCCTATAAAATGTGTTAGCATTCGCTTTGTGAAAAACAACAAAGGGCAGCCTTCTGGAAGAGCATTTGTGGATTTTCAAAGCAAGGAAGATTTAGAAAAAGCTTTAAAAAGAGATAAAGATTATTTGGAAGGAAGATATATCGAATTGTTTAGAGACGACAGTAAAAGACTGGAGGGTAATCAAAGTGAGCAACAGGAAGAGAAACCTTGGGTTAAAAAGCTAAAGGAAAGCAGTAATGATGAAGAAGATGAGAGCATTGGTGAGTCTGGACGACTTTTTCTTCGTAACTTGGCTTATACCTGTACTGAAGATGACCTACAGAAATTATTTGAAGAGCATGGTCCTCTATCTGAGGTTAATCTACCTCTAGATAAAGTCACAAACAAACCTATTGGCATTGGTTACGTCACGTTTTTAATGCCTGAGCATGCTGTCAAAGCATTTAATGAACTGGACGGACATGTTTTCCAAGGACGGTTACTGCACATTTTACCATCAAAAGCCAGGAAAACAGAGGATAATATCACAGTTGATTCATCTTACAAGAAGAAAACTGAAGCGCAAAAGAAAGCTCAAAGCAGCAGTGATCACAACTGGAACACACTGTTTCTTGGCGTCAATGCTGTTGCTGACGCAATGGCTGATAAGTATAACACCACTAAGAGAGGAATATTAGATGCCGAGTCTTCCAATAGCCTTGCCGTCAGGATGGCCTTGGGCGAGACGCAAGTTGTTGCTGATACCAGAAAATTCCTGGTTGAAAATGGAGTCAAACTTGATGTGTTTGGCCAGCCTGCATCGCAAAGAAGTAAAACTGTGATAGTAGCCAAGAATCTACCTTATGGAACAAGTACAGATGACTTGAAGACTATATTCTCTCCCTTTGGTCAACTACAAAGAATTGTCCTTCCACCTACTGGCATTACAGCTCTTGTAGAATTCCAAGAACCAAGTATTGCGAGGAAAGCTTTCCAAAAACTTGCTTATACCAAGTTTAAGAATTCACTTTTATACCTGGAATGGTCTCCAATGGATGTTTTTGTAGAAGCAAGTCATGAACAAGATACCAAGACCGATAGTCGTGAAGATGAAGACGAGGATATTTCAGGGGACGAAAGTGACACGGAACAGCAAGATGGCAAGACTTTGTTTGTGAAAAACTTGAATTTTGAGACGACAGAGGAAGTTTTAAAGGAGAAATTCTCTCAAGTTGGAAGCATAAAAAGTGTCACAGTTGCAAGAAAAAAGGATTCCAAAAACCAAGGAGCACTTCTATCCATGGGATATGGTTTCGTGGAGTTCAAAAAGAAGCCATCTGCTCTCAAAGCATTAAAAGAGTTGCAGCGTTGTATGGTGGACAACCACGCACTTGAACTCAAGATTTCTCACCGAAAATCAAGCGACAAAGTCACCAAACGACAGCGAGCGTCTACCAGCAAACAAAAAACCTCCAAAATCTTAGTGCGTAATGTTCCCTTTGAAGCGACGTCCAAAGAATTGCGAGAACTATTTAGCACATTCGGTGAGATTAAAACGCTTCGTCTTCCCAAAAAGATGGTGGGAACAGGTCCTCATCGAGGGTTTGCCTTTGTCGACTTTTTGACCAAACAGGACGCAAAGCGTGCTTTTGAGGCTTTGTCTACCAGTACTCATTTGTATGGCCGACGCCTCGTTCTGGAGTGGGCAGATGAAGAAGACGATGTAGACACACTTAGAAAAAGAACAGCAAAACATTTTCAAGAGTCGACACTGAAGACGAAAAAGAAGAAAGAAATGATGGACGAACTCTCAGGAATGACGGCTGAATCATGA

Transcript

gene06398.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034419	Domain	Probable RNA-binding protein 19, RNA recognition motif 3	Interproscan
IPR034421	Domain	Probable RNA-binding protein 19, RNA recognition motif 6	Interproscan
IPR034423	Domain	Probable RNA-binding protein 19, RNA recognition motif 5	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051945	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-