Gene detail

Detailed information of gene05353.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene05353.t1	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	chr2	21138962	21156293	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene05353.t1

ATGAAGATGCTCGCTTCGTTCCATCAATCTTTACTGGAGTTCGGCGAGAGTAAGACTGAGGCTTACAGAATGCGATCTAAAGGTGGACAGTGGGTGTGGATGAAGAGCCGAAGCTTCATCTCGTACAATCACTGGAATTCTAAGCCTGAATTCTTTTGCAGTAAAAATGTGGCTGTCAGTGAAAAACAAGAGTTATTCACTCCACAAGTAAAAAATATCACGCACAACGCTCCACAAATTCAAGCAAGCAGTCGGTCAACTTCAGATGGTATATATTCTCAACAAAGTGAACTACTTCCCAGTTGGATTACTGACACTATACCACAGTCGTCGAGGAGAACCACTCATGGAGGAGGCAAAGAGCTGGTCCATGTCAGCAGCAATTTAAGTTTAGCGGACGTCAGTTCGTCAAGAACCATGAATTCATCTCAAAATATGAGTACAATTTCTGATGATCAAAGTCGTGGACATTCACTCGAAGAAGAAAGTGACAGCACCCATTCAGTGGATCTATCAATGCCATACGCAGAGCTGGAGAGTTTCATCGAAGCACAACGGCAATTACACGAACAGTTGACGTTGAAACACACGATACTTGAAGAAGCGATTACTAAACAAAAACATCAGCTGCAATCCGTGCAACAGCAGATTTTACTAAATTTGCAGGCACAGCTGACAATCGATCCAAGCAAGAGTCAGGAAGTCTTCGAAGAACATTTTGGAAAAGCTAAAAAATTCAGCGAGCTCCACGGAGAACAGGAAAACAAACAAAAAAAACTTTTAGAGACTTTAAAAGAAACAGGAAGAAGAGTAGAAAAGCGTAATCGAAAACAATTGAAATACTATCACGAGAAAAGGCCCAAGCTATCAAACACACCTAAGAACTCGACGTTTGCTTCTTTGTTTACCCAAGGTTCCGGTGAAATGATAAAAACTGCATCAAATCAAAGATCAATGCTTGTAGGCCACGAAGGAAGCCAACCTTCCTATTCAAAAGTATTACCCCCAGAACAATTTGTCCCAGCCACACAAGCTGAAAACATTCAAATAGTAGTTCAGAATCAGGGTGAATTGGTACCGCAGGCCAACGCCCAAGCACATGTATTGCCAACTTTCACTTCTCAGCTTCTACAGCCTGTACAGTTATCGTCTCAAACTCAGCGTGCTTTCCAGAATGTTGAAAATACGACAGGGCAAGCAAGTTCATCGGTCACTTCACCAATAGAACCTCAACCGCAAATAACTATTGGAACCAACGAGCCTACTACACTTAGTAATATACAGAACCTATTGACGGCGTCGTCACAGAACCCTCAGAGAATGCAGAAACTGTTGTCGGGTTTACGGTCCCAACCCGAAGTGGCACAAACATTGCTCGACCTACTGAAACAGGCGCAAGCGTCGGAATTGAGCGAGAAAGACTCGTTGTTGTTTAGTCAAAGCTTGCAAAATACGACCGATCAATTTTCTGTCGCTCTCAATACGACCATTACCAATCAACCGACCTATCAACCAAGTTTTAGTGTACAAAAAATGCAACAACAACAACAACGACAACAGCAGCAACTGCAGCAGCGTCGAAACCATCACCATCACCAGGTACAAGCACAAGCACAACAGCAACAAGGGAACAAGAGACACCAACAAGGGAAACCAAAGCAGTATTTCTCGAGCTTTTCGACGAAGAAACTGGAAGCCATGATTTTGACCTCGTCTCCAAAGGGCCACACAAGTAAAGAAGGGTCTGCCGTCTCGTCTTGTGGCGTGGTAAAAAGCAAGCTACGTAAAGAAGGAAGTTCAGACAGTCCCTTGCTCATCCATCATCAGCAATTACTCCAGAATCACCAGGATCAACGAAGACTGTTGATTCGACAGCAGGAGCAGATTTTACTGTCCTGTCAACAGTCCAGGCTGCCACAAGCTGCTACCGCTACTAATCAAGACATCTTTGCACCCTTCGCACAAAGCATATGTTCACAGCAAGATTCATCTCGATCTCTTCTGACCAATAGCCAGCCGGGAACGTCGTCAGTAGATCAAGAAGCTCAGCCATCGACCATCAATCGTGGACCATCTCAACCTTCGACATCGTGGGATTCAGAATCGCCAAATTTCGAACTTAACGACGCTGACGAAGTAGTGCTGAATCTGCTCCTCGCACAGTCATCTATGGACACTCTGTTTGATCTCAATCCTGATAGTTTACTCGAGTATTTAAACATGAACCCTGATCTCACCTCTGATTAA

Transcript

gene05353.t1

GACACGAGTCAGTTTGACCTCGAAAATATAAGTTATGCAAATCAGGACGATTTTGTATCAGATATACAATACCGTCACGGCTTTGATTCCTATTGTGTTTTCTTCATGAATTATTAATGAGTTTGATAAGTACTTTTCGCGTGCTCTGATTGGCTACTCAATCTCGGGATATCCTTCATTATAATTCAACAATAAATTTCCCTTCGCTCTCATTGGTCAAAAGTCGATCACGTGACGCGATAGTGCCCGCTTCGGAGGGCGACCATCAGCGCTTAGTGCCCGCTGAGAGAGTGAATTTTGTTTCGTTTTAAATAATGAATTCTTTGAACGCTACTTTTCGTTCTTTTGACGAGCACAATCGCAGTTTGATGTATTAACCAATTAGATTTAAGAACGTGAATAAAATTGACGGCTTTTTGCAGTGAAATGGTTTTCTCGTGCGTTGTTTTCCCCCGCTAAGGAAAATGTTATTGTTGAATAATAAAGACAATAGAGTTGCCCTTGGAAAGTGGATGTTCCTCATAACGTTCTCGGGCGGCTATTTGTTTTTCTGAGCATCCACTTTCCGTTGGCAACTATCACAGCATAATTCCCTCCTGGAACTACTCTATTTTTTAATTAGTAGAAACACCCTTAGCGGGCAACTATCACAGCATAATTCCCTCGATGGAACTACTCTATTGTTTAATTAGTAGAAACACCCTTAGTGGTCTATCATAAATCCTGCAATCTGATTGGCTGAGCTACTATAGTGATAGACCACTAGTAGCGAAAAGTGCCGGTTTTGAAAACCAAAACAATGGCGGAAAACTGGAAAAAGTCAATTGACCGACTAGTGTGTTTCTACTAAAACAATTAGACTACTCGTTGTTAAATAGTTGGCGAGGGTCGGGCAGTTTTGGTGGTATTCTAATTCTCGATAATCACTAGCAGTGAAGGCATTTAGGCAAAAAAGCGAAGACGAAATTAACGATTTGAAAGAAAATGCCTTTCCGAAAAACACGAAAGATGCAAAAAAATTTGTTCTGAAACTGCCAATTTTACAACAAACCCGAGGAAAAACATTTTTAAACTTTCAAACGGAGAGAAAATATCAACAGACAGCTACAACCATATTTTGTTCACATAATCAAACAAGCACATTAAAAGTTCAGTAAAATACTTTTATTCTGAATATTTATGTCTCAAATACATTTTTCTCAGTTCAGAGGCGAGTTTTTAACGATATTATGTCCACTTTTTCCAATATGAAAACTTGACAGCAAATGACCGACGAGTTCAAAGATCGGCAGCAAAAGTTCAAGTTAAAAAATCTCGTGAAATACAATCAGTCAAGAGAAAAAAACTTGACAGAAACATAGGTACATTTTTTAAAGTCTGTTATACAAACACATGGAACTGAAAGCAAATACCTTAAAAAAGCAAATTTTCTCTCCAAAACTCTCTTCTGCCTGACTCGTCTTGTGAGCTCATGTTTCACGAAAACTTTGCTTTGAAAGCGACACATTTTTGCAGTCGAACTTTGGTGTTTTTAAGGTACTGAATTTGAATCATTTTCTTATTTATTTACCTTTTTGGGTTTGAATAAGTTATCTCTGTCGTTGTGGTGATAGTTATGAAGATTGAGAGTATTATAATCTGATTTTTTCAACTTTTTTGTCACACGTCGATCTTTGACTCGTAGCTATTCGTCCCTTGTCTCGCGGCTCAACAGTTTATGAAATAAAATATTTTTTCTTTAAAATGCTTATTTATTTTTATTTTTTCAAATAATCACCTGTGTAATTATACTAAAACAATTATTCACATCGCCTTCGGCTTATAATTGTTAATTATTATTCAACACATCGATACATTGCCCAAATATGGGAAAGTTGCAATATCTGTCGCCTTCACATGTAAGACAGATATCCTGCGATATATGTCATCCAAAATGAAGAACGCGCCAGAATCATTATATGAATTAAAGTTGTACACTTTAGGTAAAAAGAGTGTTTTGTTATCAATCTGTTGAATAATAAAACAGTTATTCTGCTCGATCTTGCGGGATATCGCCCGTTAACTATTCACCACCGAACAAGATTCCCGCGCGCGAGTTAACTAGTTATTTGAAATATTGTTCTTCTTGAAAATAAAACTCATATTTTTGGCTGGCTATTCACTTGTGTGGTATATACTAAAACAATTATTCACCTCCACTTTGGTGAATAATTGTTAATTATCATAATGAACGGCCTTTCGCTACCATAGGAATGGACTATGACTAGTTGTAAATCTAGTCAAAAAGCCTGTATGCACATGAGTAGTATGAGATGAAGTAGCAGATGGCACAGTTGGTGGCGTAACAGAATTAACACGCAAATGAATTCAGTATTCAATGCATCACTTGGTTTCCGTCGTTGAGTATTTTTTCACCTCGGAAACCCCGAAATGGTTTAAGAATCCCAAAAGCTTTCAGATTTTTTATGGAGTGACTGCAGTGTCAATACTAGAGCGATTTGCGGTAGGTTCATGGCTTGACAGGATAGGAAAATTTTAGCTAAAGCCTGGTTTCCATATAATCGCAACGATCGCAGAAAACGGTGTTCTGCGATCGTTGCGATCGTTGGTTTTTATAACAATTTCTCAATCACAATAATCTAAAGGATCGCAACTATCACAACGATCGTAGAGATCGAAGAATTTTGTGTTTTTTAACGATCGCAAGGATTGCAGAACACTATTTTCTTCGAATGCTTTCGATTATATTTCGGAAACCAGGCTAAAAGAGACTGTCGAGAGTGCTCGCTTGATCTGAGAATAAATAAGTGCCGATTTGGGATGATATTTTTGGGACTTGGATAAAGAAGCGTATCGCCATATTCGCCATATTCGTTGAGTCATTGTACAGACCGGCTTCAACGAACCATAGAAAATCCACAGCATATACGATGCACTGGGATGTTGCAGCCCTCTGAGACAGTAAACGAGTCGATCACAAGAGCTAGAAGAAACAGACGTTCAACTAATTAAGCGGCACATCTATTATCCTATAAATATTACATTTCAGCCAATCAGAGCTCACCATTTCTATGAAATACAGAGTGGTATTTCATGTTTTTCTTTGAAATGCAGGTTTCTATTGTTCAGTAACCAATCAAAATGCTTTACAAATCTTCCCGCCTTTTTCTTGTAGACGCGCGCGCGTCGCGTTGCTACGATTCGAATCTTTGCATAAAAATTTCAAGTTTTTGAAATTCAAAGCAAAATATCAAGTTCAAGAACAAATTCAAATCTCCCTTCACTTTCAGAAGAAACGTTAGTGGGATTTATTGAGTCGCAGAATAATGCAAAAATAAAAATGAAAACCATGGCCGGTAAACTAATGTTAACACAGCGAAATTCGACAGTCGACAATTCCAGTTTCAATACAAAACGCTTCGTTAAAAAGCGCAGTCTTAATTGTTGATCACTTGTTTATAGGATAATATGGTTATTTCATGGTTTTCTATGGATTACGAGCGAAAATACCACTCAAAAATTATATTATTTTGGTATACAACTCGCCTAAAGGCTCGTTGTATACGAAATTTTGTCGTGAAATATTCGCCGGTATTCCATAGAAAACCATGAAATAACCAATAATTATCTCGGCAAAATGTTCCAGCAAATCGACCGGAAATATCCCATTTGGTGCAACCGGGATCTAAGTGTAATGATTCTTTCAATAGGTCCATCTCTATGACCGGCTATTGGTCATATGAACTTCTCGGTACTTCGCTGTATAACTATGTACACCATGATGATATGAAGATGCTCGCTTCGTTCCATCAATCTTTACTGGAGTTCGGCGAGAGTAAGACTGAGGCTTACAGAATGCGATCTAAAGGTGGACAGTGGGTGTGGATGAAGAGCCGAAGCTTCATCTCGTACAATCACTGGAATTCTAAGCCTGAATTCTTTTGCAGTAAAAATGTGGCTGTCAGTGAAAAACAAGAGTTATTCACTCCACAAGTAAAAAATATCACGCACAACGCTCCACAAATTCAAGCAAGCAGTCGGTCAACTTCAGATGGTATATATTCTCAACAAAGTGAACTACTTCCCAGTTGGATTACTGACACTATACCACAGTCGTCGAGGAGAACCACTCATGGAGGAGGCAAAGAGCTGGTCCATGTCAGCAGCAATTTAAGTTTAGCGGACGTCAGTTCGTCAAGAACCATGAATTCATCTCAAAATATGAGTACAATTTCTGATGATCAAAGTCGTGGACATTCACTCGAAGAAGAAAGTGACAGCACCCATTCAGTGGATCTATCAATGCCATACGCAGAGCTGGAGAGTTTCATCGAAGCACAACGGCAATTACACGAACAGTTGACGTTGAAACACACGATACTTGAAGAAGCGATTACTAAACAAAAACATCAGCTGCAATCCGTGCAACAGCAGATTTTACTAAATTTGCAGGCACAGCTGACAATCGATCCAAGCAAGAGTCAGGAAGTCTTCGAAGAACATTTTGGAAAAGCTAAAAAATTCAGCGAGCTCCACGGAGAACAGGAAAACAAACAAAAAAAACTTTTAGAGACTTTAAAAGAAACAGGAAGAAGAGTAGAAAAGCGTAATCGAAAACAATTGAAATACTATCACGAGAAAAGGCCCAAGCTATCAAACACACCTAAGAACTCGACGTTTGCTTCTTTGTTTACCCAAGGTTCCGGTGAAATGATAAAAACTGCATCAAATCAAAGATCAATGCTTGTAGGCCACGAAGGAAGCCAACCTTCCTATTCAAAAGTATTACCCCCAGAACAATTTGTCCCAGCCACACAAGCTGAAAACATTCAAATAGTAGTTCAGAATCAGGGTGAATTGGTACCGCAGGCCAACGCCCAAGCACATGTATTGCCAACTTTCACTTCTCAGCTTCTACAGCCTGTACAGTTATCGTCTCAAACTCAGCGTGCTTTCCAGAATGTTGAAAATACGACAGGGCAAGCAAGTTCATCGGTCACTTCACCAATAGAACCTCAACCGCAAATAACTATTGGAACCAACGAGCCTACTACACTTAGTAATATACAGAACCTATTGACGGCGTCGTCACAGAACCCTCAGAGAATGCAGAAACTGTTGTCGGGTTTACGGTCCCAACCCGAAGTGGCACAAACATTGCTCGACCTACTGAAACAGGCGCAAGCGTCGGAATTGAGCGAGAAAGACTCGTTGTTGTTTAGTCAAAGCTTGCAAAATACGACCGATCAATTTTCTGTCGCTCTCAATACGACCATTACCAATCAACCGACCTATCAACCAAGTTTTAGTGTACAAAAAATGCAACAACAACAACAACGACAACAGCAGCAACTGCAGCAGCGTCGAAACCATCACCATCACCAGGTACAAGCACAAGCACAACAGCAACAAGGGAACAAGAGACACCAACAAGGGAAACCAAAGCAGTATTTCTCGAGCTTTTCGACGAAGAAACTGGAAGCCATGATTTTGACCTCGTCTCCAAAGGGCCACACAAGTAAAGAAGGGTCTGCCGTCTCGTCTTGTGGCGTGGTAAAAAGCAAGCTACGTAAAGAAGGAAGTTCAGACAGTCCCTTGCTCATCCATCATCAGCAATTACTCCAGAATCACCAGGATCAACGAAGACTGTTGATTCGACAGCAGGAGCAGATTTTACTGTCCTGTCAACAGTCCAGGCTGCCACAAGCTGCTACCGCTACTAATCAAGACATCTTTGCACCCTTCGCACAAAGCATATGTTCACAGCAAGATTCATCTCGATCTCTTCTGACCAATAGCCAGCCGGGAACGTCGTCAGTAGATCAAGAAGCTCAGCCATCGACCATCAATCGTGGACCATCTCAACCTTCGACATCGTGGGATTCAGAATCGCCAAATTTCGAACTTAACGACGCTGACGAAGTAGTGCTGAATCTGCTCCTCGCACAGTCATCTATGGACACTCTGTTTGATCTCAATCCTGATAGTTTACTCGAGTATTTAAACATGAACCCTGATCTCACCTCTGATTAACAGCGAGAAATTGTAGTGACCTACTATCCATCCATCCATTCATCCATCCATCCATCCATCCATCTATCCATCCAACCATCTATCTATCCATCCATCCATCTATCCATCTATCCAGTGAATACAGTAGTTTGTAAATAGTATGTAAAATTTATACCATTTGTTTGTAAATAGTATGTAACAAAAAATGGTATTTTATCAAACCATATACAAACTATTTACATAATTTGGATTTTCCAGAGGATAATATATAATGTAGTTTTTAGTTTTTGAGTCCATTTTATTAATCCAGCGAATGTGCATGCGATACTAATCGTATGCATCCTCATACCCGTGGCCTTTTTGGCTTGAAATATGAGGAGAGAAAATATATTTTCCATATATATATATATCTTGATGAGGTATTTTGTAATACTATTGATACACAACATATTTTGATGGAAAAATAATAAGAAAAAATATTTATTAGAACCATAGTTAATAGAACGAGATGGTTATGAAACCCTTTCTTTCTTTTTGTTCGCTTTTTCCAACCATGACCGTGCACAAGACAAAAACATTCTTGCATATACAGCCAATCAGCCAATGAAAACGTTTGGGTCTGGTTACTGAAGCATAATAAATGAACATAAAACAATAGATTGTGCACGGTCAAGGACCTACTCAACATCCACGCATGTTTGCTCCTTTGAAGCCTTTTGAAGTTTGCTGAGTTTCATAACCATTCTCCTCTATGAACTATGCACGTATTCAGTTTCCAAGAATGAATAAATGTGAATTTGTAACACT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14598	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR047230	Family	Circadian locomoter output cycles protein kaput-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46055	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032922	Biological Process	circadian regulation of gene expression	Interproscan
GO:1990513	Cellular Component	CLOCK-BMAL transcription complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-