Gene detail

Detailed information of gene04306.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene04306.t1	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	chr2	2967755	2970552	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene04306.t1

ATGGGTGATGAAGAGAAACTAACGACGAGCGGCGAGACAGCGTCGACTTCTACTAATAATGGCAAGGGAAAAGCACCATCAACTTCGGGACAAACGACGGCAAAAATGGAGTCAATCGACTTGAATCCCATGCAAGAGCTTGCTAATACGTTGGCTGAAGTTCTCAAAAGTACAGCGGCGTCTAATGCAAAGGTTAGTTCGGAATCAGCAGCGGCAAAGAATGTCAAACCGCCGAGAGTTTACTCGGTTGGACACAATTTCAAAACATGGCTGTCACAGTTCATGCAATATATTGGCCTTGTGAGAGTAAAAGAAGCTGACCGTAAAGCTTACCTGCTAACCTTATTAGACCAGCCAGCATTCAGGGCGGTTGAGCTATTACGATTGTCTGAAGAACTTTCGTTTAACGATTTTACTGCAAAGCTTAGCCAGCGTTTTGACTCGGGGAAATCCAAGGAAGATTACAAATTGCAATTCAGAGTGAGACGTCAGAGGTCAAGCGAAGATATTGATGGTTTTGCAGACTCGTTAATGGAAATTGTCGAGAATGCCTACCCTGATGCCGATTATAGCTTTAAAGTAGAACTGGCGAGGGATCAATTTATTCAAGGAGTTGAAATAAGTGATGATATAAGGGAGAGGGTATTCATGAGTCAACCCGAAACACTCGCTGATGCAGTTCGCACGGTACATCGAATGGAAAGTGCACGCAAAGCTTGTAAATCAAGCCAGCCAGGGGGTAAAGCGAAAGTGAATGCAGTTGCACCTGCGAGTGATGATAAAACATCTGCTGAAATTCGTGAGCTCAAAGAATTAGTTATTGGACTGGTAAATCATCGTGTTACACCTATTTTACTTGACACGGGAGCAACAGTTAGTGTATTGAGCGAGGAAACGTGGAAAAAAAGTGGCGTTAGCTCGGAACTGAATCCAGTGTCTGGAAGCTTAACAACAGCGAATGGGGAGGTTTTAACTGTTCTCGGAGAGACCAAAACAAGACTTCGCATAGGTGATTTCGATGGTTACTGGGACATCATTGTGGCGCGCGGATTGACACATGAATGTTTACTAGGGTCGGATTTCTTCCATTTCTATAAATGTCAAATTTGTTACAATACTGGAACTTTTGCTATTGCGGGAACTGTGGTACCAATAAGATGTCAAACAGGGAACCCAGCGGTGTGTAGGGTGTACCTGGAAAGGGATGTGGAGATTGGACCTGGGACCGAGCAACTGTTCACAGTGAAACTTGAGGGAGGGTGTGCACGTAATAATGGGAGTCCGGGAATAATAGAAGAGGTGCATCAAGATAATGGAGATGCAGGTATTTGTGTTGCACGATCGCTAGTGATACCCAGAGATGGTTTAACCGTAGTGCACCTTGCTAACTTCACTGATCAACCAGTGAAGGTGTGTTCAAATGATCCCATCGGAGAATATTGCCCATTAGGAACTATGAATTATGAAGTAACGTCTATAGACACTCATAGTGAGACTGAGGTGGGGGGAGAGGCTCCAAGTGCTAATGTCATTCTAAATAATGATGAAGAACTAAGGAAATGCAGTGAGGAATTACCATTTATAATTGAGTCTGAGAATTTGAGTGATGAACAGAGGGGGCAGTTTACCTCCTTGATGAATGATTATGTAGATGTGTTTGCAAATAGTAATTCAGATTTGGGAAAGACCGATTTAATTGAACACTGTATTGATGTAAGTGATTCGAAACCGGTGAAGCTACCACCTAGGCGAACACCCCCTCATCTACGAGAAGTGATTGACAATCAGTTGGATGACCTACTAGCACATGGGAGGATTGAGCCATCACAGAGCCCATGGAGCAGCCCCGTTGTTCTGGTCCGAAAGAACGATGGCTCATATCGGATGTGTATTGACTACCGATGTCTGAATCAGTGTACTGTAAAAGATGCACATCCACTCCCCAGAACAGATGATGTACTGGAAGTAATGTCAGGCGCTCATTGGTTTACTTGCCTCGACCTCGCCTCCGGGTATTGGCAAATGAAAGTGGCCGAGGAAGACCGGCCTAAAACAGCATTTGTAACACACCGCGACCAATTCCAATGGACGGTGATGCCTTTCGGGCTAACCAATGGACCTGCTAGCTTTCAACGACTGATGAATATGGCATCAAATGGACTGACCTGGACACATTGTCTAGTTTATATAGATGATATTATAATCTGGTCTACGTCATTTGAAGAGCATCTATATCGTCTACGTCTAGTCTTCAACAGGATTCGTCAAGCAGGGCTTAAACTTAAACCAGCCAAATGTCAGTTCTTGAGACAGCGCGTCACCTTTCTCGGCCATGTGGTGTCATCGCAGGGCATCGAGACAGACCCTGGAAAGACCAAGGCGGTTGTTGATTGGCTAGTTCCAGCGGATGTCAAGGAGTTGCAGCGATTTTTAGGGCTTGCGGGGTATTACAGGCGCTTTGTTGCAGAATTCTCTACCACCGCCGAGCCATTATACTGA

Transcript

gene04306.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13975	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF14893	PNMA	PNMA	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR048270	Domain	Paraneoplastic antigen Ma-like, C-terminal domain	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-