Gene detail

Detailed information of gene02615.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene02615.t1	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	chr1	39460046	39466514	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene02615.t1

AAATCAAAATATACATAGTATTCAATTGCGAAAGGTGTTTGAACCGATAATAGAAGTCCCACTATGGATGAAGGAACACACGTCGAGAAAGATGATTCCTCGTCAAAATGCAGGGATGATTTTCTCCGCGAAAAACATGTGAAGTTTTTCCAACGGTGCTTGGCTGTCCTGCCTGCAGAGTACGCTTCTCTAGATACTAGCAGAATAACAGTGGCATTTTTTGCCATATCAGCCCTGGACGTACTTAATGCATTGCATGTTCTCAGAAATCAAAAGCAAGATATCATAAATTGGATTTATTCAAACCAAGTTGTGCCTACAAATGATGGAAGAAACAAAGCAAAGTGTGGTTTCCGTGGATCTGCCATGACTGGATCTAATCTAAAGGAACCTGACACTGTATGTGAATATGAATGTGGTCATATAGCAATGACATATACTGCCTTAGCTATGTTACTTATACTTGGGGATGATTTGTCAAGAGTTAATAAGAAAGCTGTTGCTGAGGGACTTAAACATTTACAACTAGATGATGGAAGTTTCTGTCCTACCCATGACGGCAGTGAAAATGACATGCGGTTCATATACTGTGCATGTTGTATTAGTTATATACTAAATGACTGGAGTGGAGTCAATCTGGACAAAGCTGTACATTATATAGTCAACAGTCAGTCTTATGATTTTGGAATAGCTCAAGGTCCCAATCTAGAATCCCATGGTGGATCAACATTCTGTGCTATAGCGTCACTACATCTAATGGGTCGTCTTAATGTAGTGTTCTCTGAAAGTGATCTACAGAAGTTAAAAAGATGGTGTTTATTCAGGCAGAAATCTGGTTTCCAAGGGAGACCAAACAAACCTGTTGATACTTGCTATGCCTTCTGGGTAGGGGCGTCATTAAAGATTCTCAATTCATTTGATATGATTGACTTTGTGGCAAATCGTGACTATTTAATGCAGACACAGGCTAATGTAACAGGCGGTTTCTCTAAATGGCCTGGAAATCATCCTGATGCATTGCATTCATATTTTGGTATATGTGGCTTGTCACTTATGAAGGAACCTAGTCTCTTGCCAATCCATGCAGCACTCAACATTTCTCAACGAGCAGCAGATCATCTTCAAAAGCTACAGGAAACCATAAGCTGACATTGAATCTAATCAATGTACAATGAACTCGTAACTTAGAAAAACTATATCATATCTCACATCTTTGGAAAAAGCAATGCTGCCAAAAATAGAAGTTAATATAGTCCTAAATCTACAACTCATTGTTCAAACACATGGAAAAACTATCATTATCAAGTTCATACCTAATACCTCAACAGCGTAGCCAGAAGGGATCCTAGTGTGTGTGCGACCTGGTCCCCTCCACTCCATTGGGATTAAAAGAAAGAGGTGTTCCTTTTTAGAGGGGAGGAGACTTGTTGAGAGAAAATAATATTCTAGCTATGGTCCTTTTTTGAGGGGAGGAGACTTGTTGAGAGAAAATAATATTCTAGCTATGGTCCTTTTTTGAGGGGAGGAGACTTGTTGAGAGAAAATAATATTCTAGCTATGGTCCTTTTTTTGGGGGAACTCAAAACTAATATAATTATTGCAAAAAAACTGGCTTGTCTTGCACAAGCGTTGATAGTGATCATAATCCAGTGGATAAAATAATTATGATGTTTATCCATCCACTGTCATAACATTATACACTCTCTATGCCACTGCAATATGAAGTTTATCGGTAAGAAAACATATCATCCATCCACTGTCATAACATTATACACTCTCTATGCCACTGCAATATGAAGTTTATCGGTAAGAAAACATATCTTAAGAGTGGGTTCCCTGTGTCTGGTCTTGAAGGGAGTGGAAGGGGAGTGTTGTTGGTAAAGTGTAATATATGCAGGCCATAATATTGCAATGATATGATACAAATTATAACAATAGAAGATAATGGTCTGGTCCTTTTCCTGAAGAGATCAAGAACAATGAACTTGGTGTTTCCAACCAAATTGATACCTCATACATAGTCAATTCAATATTACAAGGTTGAATGAAGCTTGCTTTGAGTGTAGATAACTTATCTACAGCCTTCACTATATCAGGGAAAATTTGTATATATGCCCTTGAATTGAACAATGGTTGCTACTGAGCTTGGCTAAATGCGGTAAATGTAGAAAGATGAAATAATTTGAAAAGCATACTGCTAGGTGATAATAAAGGGTTAGACCCAAGTACACATGGGTGTGGCCATACTCATATTCCTGTCTTGTAGCATAATGATGTGTCCTAGAACAATATATTAAAATATATGAGCAATAAATATAATACAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00432	Prenyltrans	Prenyltransferase and squalene oxidase repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001330	Repeat	PFTB repeat	Interproscan
IPR008930	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan
IPR041960	Family	Geranylgeranyl transferase type-1 subunit beta	Interproscan
IPR045089	Family	Prenyltransferase subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11774	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004661	Molecular Function	protein geranylgeranyltransferase activity	Interproscan
GO:0004662	Molecular Function	CAAX-protein geranylgeranyltransferase activity	Interproscan
GO:0005953	Cellular Component	CAAX-protein geranylgeranyltransferase complex	Interproscan
GO:0008318	Molecular Function	protein prenyltransferase activity	Interproscan
GO:0018342	Biological Process	protein prenylation	Interproscan
GO:0018344	Biological Process	protein geranylgeranylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-