Gene detail

Detailed information of gene01643.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene01643.t1	PROTEIN CBG26694	chr1	26117935	26122236	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene01643.t1

ATGACTTCACAAATACCGATTCCCGAAAAGCTAGATTCAAAGAAACCAGAGGATTGGAAGAAATGGATCGACCGCTTTCGTTGCTACAGCATCGCGTCAGATCTCGTATCGAAGTCTGCCACTGTACAAATCAATACTCTTGTTTATGCGATGGGTGGAAATGCTCACGAAACACTGGAAAGTTTTCACGTTTCTACGACTGACAAGGACGAGTGGACCTTTGAGAAGATCGTGGAGCGATTCAATCGGCATTTCATTGGAAGAACAAACACGATCTTCGAGAGGGCACGATTCAACCGGAGAGTACAGCGAGAGAACGAGCCAGTCATCGATTTCATCGATGACTTGTTTAAATTAGCTCAGACCTGCAACTTTGGAGAGCTAACAAACGAACTAATCCGCGATCGGATTGTAGTTGGAATTCGCAATAATGATCTTTCACGTAAATTGATGCAAGACGAGAAACTTGATCTCGACAAAGCTGTCAAGCAAGTAAAGGCATCGGAAATGATAAAGGAACATCACGAAATCTTGAAAGGCGACAATGAAGAAGCTAAGATCTCCTTTGTGAAACGGGACAATCCAACATGGAGAAAACCGAAACCAAGTACAACACTAGAAAAGGAGAAGAAATGCTTTAACTGTGGTGGGAAATTCCACAGACGCCAGGAATGTCCGGCGAGAAATGCCACGTGTTTCAAGTGTCAACAGAAAGGTCACTTTAGATCAGTTTGCAGAAGTTCGTCTGTCAATTACGTTGAAGACGATCAAGAAGAAGAGTACTCCGAAGCATTCCTTGGAAGTGTAGACTCCAATGACTCCAAACAGAAATGGAAACTAATGGTAAAGATTGGCCAAACAGATGTGGAGTTTAAAATTGACACGGGAGCGGACGTGACAGTCATTCCGGCATCTGTTTACAATCAAAGCGGATTGGATAACATTACTAAGACAACGAAAAAGCTCTTTGGACCCGGTCAAACTGAACTGAACGTCATAGGACGTTTGATGACAACGCTTGAAAGCAGCAAGACAGCGATAAAAGATGAAGTGTATGTTGTTAATGACCTCAAGGAACCGCTTCTTGGACGGCCAGAAAAAGAGAAATTTAATCTTCTTAAAAAGATCAACAATGTCACGCAAACCGGAAGTGTAACATACGGAGAGGAAATAAAGGAAAAATACCCCAAATTGTTCAGTGGTCTAGGCACAATGGACGGTGAATTTTCCATTAAACTTGTGCCGGGAGCCAAACCGTTTGCTCTAACTACACCACGGCGTGTTGCCCTACCACTTATGGGAAAGGTTAAAGAGGAACTAGCTCGAATGGAAAACCTAGAACTGAGTCATTACAAAGATACCGGAAGGTGTAACAACGGAGTGGTGTGCAGGTACTTTGAAATTGCACCTCTGAGGAACGAGACGTCTGAAGATGTTGTTGAACACCTCAAGTCAATTTTTGCCCGCCATGGGATCCCAGCGACGGTGGTCTCAGACAATGGCCCGCAGTATTCAGTTGCATCTTTTTCTAAGTTCTCTGAAGAATGGGGGTTCACCCATTTGACGAGTAGTCCACGATACCCACAAAGCAATGGAGAAGCCGAACGGGCAGTACAAACAGTAAAGAATTTACTAAAGAAGTCTGAGGATCCTTACCTAGCAATGCTGTCGTACAGAACCACCCCCCTGCACAATGGGGTAAGTCCCGCCCAACTATTGATGGGGAGGAAACTTAGGACTACCTTGCCTGTTACCCCAGACCAACTAAAGCCATCACGGACAGACCTCGCAGACCTTCAAGCAAAGGAGGAAGTCTACAAGAAACAACAGAGTCAAAACTTCAACAACTATCACAAAGCAAGAAACCTTCCTGAACTCCAGCCTGGAACTAAAGTATGGCTAACGGATCAAAGGAAAGAAGGGATGGTAGTCAAGAAAGCTGATGAGCCTCGATCATACATTGTCAAAACAGAAAGCTCAACTAGTGGGATAAGGAGGAACAGGAGACATCTGGTGGCAAGCCCTAGCGACACCTCAAGTTTGACCCCATCTAATGACATGTATCAACAACCAGGCTTAGATGAGGAACATTCAGTTCCTGACTCTCCAAGCTGTTCTACGAGTACTACTCCTATAACCACAAGATCGGGCAGAGTAGTGGTACCACCCAAAAGACTTGATCTATAG

Transcript

gene01643.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-