Gene detail

Detailed information of gene01199.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene01199.t1	COLLAGEN ALPHA	chr1	17615475	17620220	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene01199.t1

GGCTAATCACATCGCTGTAACTCACAAGGAAAACAGTTGTCCCGACAGGACAGACCCAACACAACTCTGCCACAGAACAAGAAACTCACTGCAAGGTAAGATCACCATGCACAAACCACCCAACAAGGTTTTTATTAGCAACATATAGTCTAGATCAAGAAATAGAAGGATAGGTTTTCGCTAATTGGGGTCACGGACATTCGTAAAGCGAATCGAAACTCGCTCTCTGATTGGCTGAAAGGGTGCTACATGGCCATGATCTGTGAGGGGAGGTGGGCTTCACGATTGGTGATTTTTATTATTAAATAGCTATCCACTTATATCAATATTACCTAAGAGTCGATTTGGGTCATGGCTTACTCATTGTTTGCTTTCACGCTCAATTGCACTTCGGACAGTGATTGGCTGAACCAGACATAAACACGTTCAGCTTACATTACGTCATATAAAATAAAATTTGATCCCTTGTAATGCCACGTCAAGCACATAAACGTGGTTGGCTGTTTTCACGGCGCCGACGCAGTACCAAGCCAACGCTAATATTGAAACATTTGAGATCGAAGCCCAGGTGCATACCTCCTACTTCAGATCTAAACAGTGACAACCAGGCACAGGACGTTGTCACAGATAGGGCATGGGGCTGTTAGGAGGCTACAAAAGCCTTCTAGCATTATGTATAGGATTTATTATCCTAGAATGTACGACTTCACAAAGAATGCTAGCCGACTGGCCGAAAATCGGTGACAGAATAACTCAGCCATTCCTCGATCAATTGATGGTCAGTCAGCTGCTAGAGCAAAATCTTACACTCGGATTCTTCTTGAAAGGCCTGAATGGTCCTCCAGGTCCAGCAGGTGCTCCCGGTCCCCCAGGTGAGCCTGGACCAGCTGGTATTGCTGGCCCACCAGGTCCTCCAGGACATGTAGGAGAAGACGGTGCTCCCGGTGCTCCTGGTGCCCCTGGACCTCCTGGTTCCGCTGGTGCTCCTGGTCTTCCCGGTGAGAAGGGAGATATTGGTGATAATGGTTCTCCCGGTGCTGCTGGTCTTCCCGGTGCTCCAGGTCTACCAGGTCCTGTAGGTGCTCCTGGTGCCCCTGGTCCAGAACCCATCATGCCGAACTTTACCGTTATCTGCGAAGGAGAAAAGGGATGGCTTCAATGTAAACAATACGAGCTTATCAAGATTACAAAATCTTTCTGGGGTCGTGATGATCACGCTTCCTGTCCAAAAATACCACCTGGTCTTTCATCGGACAGACTGTGTGAAACCAACGCAGAAAACACACTGTCAAAGGTCAACAGTCAATGTAAGAACGAACAAGCTTGTGAAGTCGTGGCATCAAATATTTTCTTCGATGACAACAGTTGTGGAAACGTCTACAAGTATTTAAAGGTTTGGTATGAATGTATTCCCGACGAAGCGAACGCAATTGACGTATTGCACGATGGAGGAAAGCGACGACGAAGGAAGCGAAAGCGTGCGACAAAGGACAAACGATCCGCAAAAGAATAAATTAAAGACTTTAGTTCAATCGATGAATTCTAGTCACTTTAAGACGCACTCTCAATATTGAGTTTGCAATTTGCAATTCCATCAGTAACTAGTGCTTACTTTGTTGAGCTGAGTAAAGTGTACTTGACCATGTGCTACGTGGTGTACAAATACACTTTGTCAATATGTATGTATATTGGACTTTTCAACTTTAATTTGATACGGATGTATTAATCAATACTCTAAGTATAGAAAGTCCCTGGTTATTGGGGATATAACTGATTTAGGCGTGAGTGTGTGTGTGTGAAATAGTGTAGCAGGTGCTCGGCCGGTCATCAAGATAGTTTTATGAAACACTGTAAAATACAACGGGTGGAGCAGGCAAATTGTGTATAGATATTCTTACCAATGTATTTTGGAGTGTCGGTGAGTTTGTGCTGAAATAAAATAACTTTAATTAAGTTCCTTATACATTTGTCTCGCTTTGCTGATCAACGCCATACCATATACGGTATGGGGAAGTGGCCCCGTACCGTATAGGGTATAAAGAAGCTCTAACCCGTATATGTTGTAGGTCAGAGGGTAAAGGGTGCGTCAAATAACAAAACGTTTTTAATCCGTTCCATCTGTAATAAGACTTGTAATAATACCGACAAAAGATAGTAAACTTTACACTTGATATCAGGATTTCGTTGTGTATATTCTTTGATCGTAACAGTGACAATGTTCTACACAGTTCTCTTTTCAGGCACCCCCTACATACTGGCCGCAATTGATAAGCGCAACAAACCGTTTTTAATTCCCTGCTTTATATCCATGGGTTCAACGTTTTCGAAACATACGCCAAAGTAAGGTTAAATAGTTTGCAAACTCCATTTATCAGAACTGTATAGATTAATTGTATGGATAGGAACCAATAAAGTTGCAAGTTGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-