Gene detail

Detailed information of gene00726.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene00726.t1	FAS-ASSOCIATED PROTEIN	chr1	8745815	8751393	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene00726.t1

ATGGCGGCCATTACTACCCCAGGTAGTAAAGACGGGAAAGACAGCGATAAAGTTCTGGAGTGCTTGAGAGAACTACAAGTAGGTCAATCGGTCATTGAGAAATTCAAGAAAGAAAAGATTGACTTGCATGCTCTATCCCTTCTAAATGATGATGAACTAAAAGAACTAGGATTATTTGCAAAGGGAGATAGGTTGAAGCTTAAAGCTTGCATATCTACCGAAGTTAGACAAAAGCTAGTGAAACAGAAGAGAGAAGAGAGACTGAAGGAATTGAAAGAAATTATTCAAACTGGAAAACAACACAGCTCAAAGAAAACAGACAGAGGTGAACTTCCAGCTTCACGAAAAAGGAAAGGACCTATACAATTTCTGTTTGGGTGGAAACACTGGTCAGAAAAGAGAAGTATGTATGTACAAAAAAGAGTTGGAGATGGAGGTGGGACCCGTAAAGTCTATGTTCCTAGAGATGCCTCTCTATGGCAGTGCAAAAAGATTGGAATCGATCTCTTCTTCCCAGACAGTGATAGCATGATGGAGCTCAACAAAGAAGAACTTCTGTTTTCTCTAGGCAATTTCAGAGGAGAAAAAATAAGTTGTCATGATGAAGTGGGAAGTTCTTCAGATTTCCCACAAAAATACAAAGAAACAACTCAGATGAATCCACCACGTCTGTACTTGTTGAGTAAGATGGACACAGACCAATTAGATGCAACCTTAGATGAATCAGTTTTTAGCAGAAGCACCATCTCTTCAGAAGCTCATAGAGATCCACTACAACAGGAACCAATCGAGATTGACTTAGACCAATTAGATGGAACCATGCATGTAGATCAACCTGTTTTTGAGACCATTACCACATCCCCCACTGCAGAAGCTGATGTACTAATTGGGTCATCATTAGAAAGAGCTCTACTTAAACAACAACAAGAAAAAGCATATGAAGACAGCCTGTTAGCGGACAGAGCTAAAGAGAAACATAAGAGAAAAGAAGAAGAGAACACATCACAGCTAGAATCATTGAAAACTATAAGAACAAGCAGAGTGCCTCCAGAGCCCAGTGATCATGAGGACAGAATCCAGATAGCCATCAGACATCCTCTCCTGGGCCTACAGTCTCGATTTTTTCTCTCGTCTGAACTGATGACTGTGGTTTATGATTGGTGTGGGTCCCTGTCCCTCAAGCCACCATACTTCACATTAAGATTGACCCCAGATGGTATCATCAAGGCCAGTGAAAGTGCCAATAGGTATGCTAAAGTCATTTTGCACATGCACAATGAAACTGAACCGATACCTCTTCAGGACCTTCAAGAAAACAGTCCAACAGTAAGTTTTAAAGGCTATGGTCCTCTAATAGAAAACAACGATGACACTCTTGAAATTCCTGAAGTAACAGCATTGATCCCCAATCAGATAATGATTGATGATGTAGAAAGCAGTACTGTTAGTAATGAAAGTGAAGATTCGATACTGACTACTGACAATATAAAGACAGTGAAAGTTCAAATTCGTAGATCACTGCTTCTACAAGATATGCTCCAAGCTTTTTCAGGAAGGATACCCACTGCTCCTGTACGTATCTGTTTCATTGACAAGTCAGGTGAACAAGAAATGGCTGTGGACAGTGGAGGCGTTCTAAGAGATGCTCTAACAGGTTTTTGGAGTTTGTTCTTCGATAGCTGTACCATAGGTGAAGATGAGAGAGTGCCGCAACTACAGCACGATTTTCAGCAGTCTAAATGGAAAGCTGTTGGAAGTATATTATACTTAGGTATTAAACAGTTAGAATATTTCCCAACAAAACTTGCAAAGGCTTTTTTCTTGACATTTCTTTATGGTGAAGGGGTGTTGTCTAGTGACAACTTGATTTCCTCTTTCTTAAATTTTGTATGTAATGATGAACGTGTCATCATCAAAAATGCAATTACTAACTTTTCAGATGTAAATAATGATGACATCATAGATCTTCTTGATAGATTTCACTGTAAGCGATTACCCTCAGAGAGTAATTTTAGAGAATTAGTGTTAGAGATTGCTCACAGAGAACTTATCCAAGCGCCGCAATATGTTCTTGATTGTTGGACAGAATTCCGTCCAACGTTTCTCAGATTGCCCTCTTTGTCCACTTCTGAGGCTGTATTAGACCTTTATGAGAGATTACTTCCAACCAATAAGAAGGTTTTAGAGTTGCTGGTCCCTTCTGAACCACCAAGTAGCATTGCCGAAAGTGATACTTTTTTATTTTTACAGCGTTTTGTGAGAGGGATGAAAGATGATATGCTAGAGAAATTTTTAAGATTTTCAACTGGAAGTAATGTTATTTGTGTCAATCAAATCATGGTTACTTTTAACAAGTTAGATGGTTTCTCACGACGGCCAGTGGCACACACATGTGGGGCATTACTTGAGGTGCCTTGCACATACAATACCTATGCTAGTTTTCGGGGAAAATGGAGCAGTGTCCTTAAACAGGGAGACTGGGAAATGGACTTTATCTAG

Transcript

gene00726.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-