Gene detail

Detailed information of gene00343.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene00343.t1	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3	chr1	635518	667541	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene00343.t1

ATGAAGTTTAAGCAACTGGTAACCAAGGTAACAAGGCCAATTAGCGGAACTTGTCTTGACCATGTGTTTGTTAACTATCCCTCAAGGATTCATAGCATTGTGACCCATGACACAGGACTTTCTGATCATCTACCTGTATTTGGTGTACGTTTGTATAAATCAAAGAATTCCACCTGCCCACGTGCAAAGTCTCCTACCATCACTTTCCGTAACATGAAACACTTCGACGAGATGGAATTCAAAACAACCCTCAAGGAAATGCCATGGGATACTGCTTTTGTTTTTGACGAGGTTGACGACATGCTCGGTACATGGGAAGCTCTATTCAACAAAGCTCTTGACGCTCATTGTCCTTGGAGACAAAAAAGGGTCTCGCGTGAAAATCAAGCTCCTTGGATAACCAAAAGCGTTATTAATCAGCTGAGGGAACGTGACACATTGTTAAAGTTAGCTAAACGTACAAATAAAGATACCGATTGGAATAACTACAGATCTTCACGAAATAAGGCTGTTAACATGATCAAGAACGCAAAATTTAAGTATTATGCCAACTGCTTTGAAAAGAATAAAGGTGACAGCAAATCCATTTGGAAAACTATTAAGAAGTTAGATGGTTGTGGTTTAAAGGCGAAGACAGAGAACAAGCTTACTGCTGATACTGATGCATGTGAATTTGCTCAGAAGTTCAACAATCATTTTGTCACTGTGGCTGATCGCTTACGTGCATTGTTACCTCAAGTGTCTTTTAACATCTCAAGACTTGAAAACTTTGTACTTTCACGGAAAGATCCAGATGTGAAATATTCTATTCCACCTGTCACAAATGATTTCATTGTGGGAAATCTGAGGCTTCTTAGTTCCAACAAGGCAATGGGCGTTGACAAATTAAGTGCGAGGATCCTAAAGATTGCAGCGCCTATTATCACACCATCAGTTGCCAAACTAATGAACTGTCCGCTTCAGTCATCAGTTTTCCCAAAGAACGATGACACGACTATTACTGCTTCTGCCGATGTTGGAGCCATTGGTAAACCATTGGTCAACAAGGTTCAAGAATTTCTTGTTTTATGTGGTCAGCCATTAACATCGTTACGAGATAAGATACATTGTTCAGCTGACCATATAGTACCTGGAGACCACAGTGACAACCCCGGGTTATCATTAATGGCACCATGCAGGGATATATGTAAGTCTGGTTTCTTTTACTTTGAGAATATATTCTACAATGACATGCGAGATGGTCTTTGTAGAGATTACAGCAGAACCATCTTTGATTGGGCTAAGGACAGTGATGAATCATGGAGTACAAAGATAAAAACAGCTACTACCAAGAAAATGGAAGACACAACATTTGAAACCTTAACTGTACGGCTTGGTTATCCATATCTTTACTGTCATCAAGGCAACTGTGAACATATTGTTATATTCACAGATCTAAGGCTTGTTCATGTCGATGATAGTGATAACGCAATCGATTACCCTGTTCAAATATTCCGCCATCGCTGCAGGCGTCGACGATGCCGTGTCTGTAACATATACACAGCGAAGTGGATTACAAAGAATGATATTTTAGCCAGCGAGGACCCTTCGTTTTTCTGTGACAAATGTTTTAAGTCACTCCATTATACAGCTGACAACCAAAAGATTTGTGACTTTGAAGCCTATCCATATATGGGGTTCTCCAACTGGTGACGTAATATGTGGGGTTCTCCAACTGGTTACGTGATATGTAGGGATCTGCAACTGGTGACGTGATAAGTAGGGATCTGCAACTGGTGACGTGATATATGGGTTTCTCCAACTGGTGACGTCATATGTGGGGTTCTCCAACCGGTGACGTGATATGTAGAGTTCTCCAACTGGTGACGTGATAAGTAAGGATCTCCAACCGGTGACGTGATATGTAGAGTTCTCCAACTGGTGACGTGATAAGTAAGGATCTCCAACTGGTGACGTGATATGTAGAGTTCTCCAACTGGTGACGTGATAAGTAGGGATCTCCAACTGGTGACGTGATATGTAGGGATCTCCAACTGGTGACGTGATATGTAAAGTTCTCCAACTGGTGACGTGATAAGTAAGGATCTCCAACTGGTGACGTCATATGTGGGGTTCTCCAACTGGTGACGTGATATGCAGGGATCTTCAACTGGTGACGTGATATGTAGGGATCTCCAACTGATGACGTGATATGTAGGGTTCTCCAACTAGTGACGTGATATGTAGGGATCTCCAACTGGTGACGTGATAAGTAGGGATCTCCAACTGGTGACGTGATGTGTAGGGTTCTCCAACTGGTGACGTGATATGTAGGGTTCTCCAACTGGTGGCGTGATATGTAGGGTTCTCCAACTGGTGACGTGATATGTAGGGTTCTACAACTGGTGACGTGATATGTAGGATTCTCCAACCGGTGACATCTACAATAGACCCATTTCACGTATTCCCAAACTTGAGAATAGAACAATATGTCGTCTCACTTGAAATTTGAAACCTTTCTCGTACAAAAGTTTTCATTTTGTCCTCCCTTTCGGGAGTAAGTGAAATGTGTCTATACAGTACCGGTATGTGGTGTTCTTCAACTGGAGATGTCTACAATAGAACTGATTTCATATGACTAAACAACAACAAGTAGTTTATTTGAGCCTATTGGGGGGATGGGGGTTGAATTACTGGGTATGGAAAACTCCGGGCCGGAGTGCTGAATTAGAAACTATGGAAAATTCTTCTTTACTTTGGGCGTAATGTTTTCCCATTTCAGTTCAAGTGATATTCTTTTCAGTATTAAAGGGGCCAGGAATCGTGAAAGTTGCCTACCTTATAATATATATACCTTTAGGTCTTAATAAGCGTGAGATGAATTATAGCATTTTATCTAGATCTATGTTGTAATGTTTTTACGTCATCTGTCATTTCTTGTTTCGGCTCATTGTGCAATCACTCCTTATAGCTAGCTATATATTTGTGTTTCCCATTTGTAAATCTCTCCCGGCTATAACCTGAAAAAGGCTAGTCTGGCTAGCCGAAATATAGTACAAAATATATACATATATACGTCGTATTATTAAAATGTTGTATTTGACCATTTAGATCTACAGTCAACTCTCTCTAAGGCGGACACCCTCGGGACCAAATTTACTGCCCGTCTTAGAGGGTTACTGTAACCTGATACCCGAACCTCAAAACTCAAACCAGTGCTTTATTACAGTGTATAATACCCCGGGGGCGAGGGGGAGGGGAGGTACTCCTATATATTGCCTATACGGGGATATATGCCTATATGGTTTTTCGGAATTTTGGTCTTGATAGGGTATACAATTTACATGTTTTTGTCTTGAACAAGGTTATCAGTCTTGAATAGGATTATGCCCTTTCCGGCAAATCTTATACCCCATTCACACCTGCAACTAAACATGTTTAATTAAACTGTGTTTAATTTTTTGTAAAAATATTTTGAACTCTGCTACATCTACCCAACACAGCTTGTTCAGTTACACGTGGTTTAGAGCCAGGTAGTATGCAGCGTGATTGAACAGAATATTAAACTGGTTTAGTTAAACAACTTTTAAACATTTTTAGTTACAGGTTTCGGAATTTAATTTTTTAAATCAAAGGCACTTTCCTTTTCAGCCACAGTTTTAAATTGTATAATGTGTTTGCAAACGCGTTTCTTGGCATTTATAAAACACATGCATGGTTTTTGTCATATTCGAATGGGAATAGTTCGGAAAAACCATTCATGTGTTTTAGAAATTTTTCCCTGTGTTGATCTTGAATAGGGTATATAAATTCGATATATTGTTGTCTTAGATAGGGTCATGAAAACCCCCCAAGTGCCCCCTCCCCACCGGTACAATATACGCACTTTGAACGTTTGTGAATTAACCATCAAAGTGACACGGTTCTTCGAACTTCCAAAAACTCCCAACTGTACCTGCTTGGATCACGAGGCTACCTCGCTACTGTCAGTCTATCATAATCGTGATCAGGTACAAATTCACGTCCGAAGATACTTTAAAAGTACACTCGAGAGATATTGGTACATGAAATTAACTACTAGCTATAAGATACTAAAGATGTGATTGCCTGCTTGACCATTGATGAATTCCTCGAGCTCAGAGCAAGAATTAAAGAGATAAATGCGCTCGTGGAGATCATGGAACGAAATCCACAAGATCCAGATTCATACTGTATTTTTTGTAAACATTCATTGACTTCATAAATCACTAATATGCTCATAAGTGCATGTGTTTCATTTTTGCTGGGACAACGAAAATTGTATATAATATATGAGTGTCGATACTAGCTGGATGTTTATTCTCTAAAATATGAGGGTTCCCGACTAATTATGGCACTAGCTTGAGATTGTACGGAGGATCGATCTCTTGCTAACATGACCTTATATAATCACTTCAAAAGAAATTGTAACGATATATAAAAATAAAATATTGTAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12251	SNAPC3	snRNA-activating protein complex (SNAPc), subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022042	Family	snRNA-activating protein complex, subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13421	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding	Interproscan
GO:0003681	Molecular Function	bent DNA binding	Interproscan
GO:0019185	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-