Gene detail

Detailed information of ctg93-4.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg93-4.4-1	SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1	chr2	26050724	26066279	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg93-4.4-1

AAGAAGATACATTTGGTACAGAAATGCCTGTTGGTTGCATTTGATATGTATGTATCCTGTTAGTTCATCAGAATAACGTTTATGTCTATTTAATTATTACGTTGACATTTATTGTGTGCCTAGCATTTATCAGGTATAGGTTTGTTTTGTCTTGAATGAGGTCTGATGGTTGAGGATTGGTAGAGCGATTGAAACCATTTAAACATGGATTCCCTGGCAGCAGCATTCTCCAGTGGCTTTCAAGTGAGCCATGACCCAAACACCACCGCAGCCCAGCACCCCCGCTACTCGCAGTACAAGACAAAAGGAGACAACTTCATGCAGAAGAACAGAAGGCGGCGCCTCTTGGATATTCAAAAACAGCACAGGTTTGATGCGGTGGCTCATTCGAGACGACTGGCCGATGATTACTGGAAAGGGATGGAGAAGGAAGAGGAGGAGGTGGAAGTAGAAGATATGGAAGTCCAAGTATCGGTCAGGAAACCTGGCAGATACTACAGAAATCAGCTGATGATGTCTGAATGGCTTGTGGAAGTTCCTGAAGAATTTGAAGAAGAATGGCTTATGGTTCTGTGTCCTGTTGCTAAGCGAACTCTTGTTGTTGCATCACATGGTAAAACAGTGGCATATAGCAAGGCAGGCTATCGAAACAACACGTTCCATTCATACCTGCCTGGAGGCAGTCGCCATCAATCAGGAAAATATAACGATTACACCATCATGGATTGCCTCTTCCACGAAGTGACGGGAACATACTGGATTCTAGACCTCATGTGCTGGAAGTCTATGCCCATCTATGAAACCGAGACTGAATTTCGATTTTACTGGCTCCACCAGAATCTCCAAGAGTTCCCGCAGCTTGGTGTCAAAAGCAGACAAAACCCGTTCAGCTTCCAGGCCTTGCCTCGTTTCCCCTGTACTCCACAGGCAATAGAGGAAGCTCTTGTAAATTCCACTTTTGAGATTGATGGGATCTTGTTCTTCCACAAACGAACCCACTACATGTTTGGCTCGACACCACTTGTGGTATGGCTCAAGCCGTACATGCTGCAGGACGTTCTCAATATTCCAGTGCCACAGCGGTACCTCCGACAAATGCCGTCCACGTACATAGACTACGCACACCACATCGCCGAGGTGAAGGCTGACAAATACGGCAACGTACACAGGCGACCACGCAACAAGAGCAAACCGTCAACGCCCGACAGCAAACACTCCGACAGTAACAAGTCCACTCCGGGTAAGACGGACGACAAAGCGGAAAGTATTGAGGAGAAGGTTCCACAAGAGAAGAAAGTTCTGGGGATGGATGTGAATCATGTGGGACAGGGAGATGGTGGCGCACTTACAGCTGGTACCAGTATGGAGACCACTGCTAGTGCCGAGGAAGTCAGTCAGAGTGAAGCACAGATCAAACTTTTAATTCAACCAACTAAGTTTAAGTTAGGAAACATGAAGATGTGTGATAGGGTACTTCCTCCTTCAACGGAGGGAACTTCTGCAAATGAACAATGTAAAGCCGATATACTGAGCCAGGCCGGGGGTGATGTTCTAACGTCATCCGACACAAGTCACATGGAAGAGGTGGTGGTTTCACCCAACGATTCAATGACTGGAGAGCAAAGTCAGTCTGGAGAAACTGGGAAGGAAGGCAAAACCAAACAATGAAATCATATTCATGGTTTAAAAACATTACTCTGATAGCCGACAACGACTATTCAAATTTTGGAGAAAAAGTCAATTGTTTTGGCTTTTTATACAATTTTAACTGTTATTTCTTCTAAGGTTTTTGGCATACATCTGTTTCACAAAGACTGGAATTGATCTCAAATGCTGACAAATTGATGTCTATGTGGCATAAAGATATTGGCTTTTATTTTTATTTGGGTATCACATCCCTGTTTAAAAACAGATTAAACTATGAAGGGTAAATTAAAACTGCAAACCATAGCTTCAAGGTATCTGTGAAGTATCTGTGGCGTATTCGTGTGTGTGCGAGTGAAACAAAAACGGAATTTGTTTAATACTGAAACGGAAAAAAACGGAATTTGTAATATTATAAAACGGAAAAGGGAAAAATCTGAAACGGAAAATCAGTGCCTCTACATCACACACATACAATTTGTATGGTGTTGTTATGACATTAGTGTCTCAGACTCTATTAGAGTCTCGACTCTTAAAAGTTTTATAAGCACCAAGCCTGGTGAAATTGTGTTTTTTATTCAGTACTTTAATTTTTTTATGGATTTTCTTAGGAACTCGTGAAGATTTCCTCAATCTCCAACAGGACGTTCTCTGTAGTTGGCATGGAATTTTCTTTTATTTCATTTCCCCCCCATTTTCCTCATTTTCTGGAAGCAGTCGGTGCAAGAACATGCACATAAATGTATTAAAGTGTTGAGTAAACCAGTCAGTGCAAGAACATGCACATACATGTATTATAGTATTGAGTAAACCAGTCAGTGCAAGAACATGCACATACATGTATTATAGTGTTGAGTAAACCAGTCAGTGCAAGAACATGCACATACATGTATTATAGTATTGAGTAAACCGTGAGTATGTGAGCTTTGTTGATATACACAATGAATAGTTTCTGTGCTGATTGAATGAAGATGACTGATGAAAATGTTATTAATTTGGTGCACTGTTGGGGGTGGGGATTATGTAGATTAGTGATAGTGCCCTTACTTGAGGTGTGATGGGTCAGAGAAGGTCCTTAATAGATTGGCTCTCCCCCCCCCCCCCCCCC

Transcript

ctg93-4.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11538	Snurportin1	Snurportin1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002652	Domain	Importin-alpha, importin-beta-binding domain	Interproscan
IPR017336	Family	Snurportin-1	Interproscan
IPR024721	Domain	Snurportin-1, N-terminal	Interproscan
IPR047857	Domain	Snurportin-1, m3G cap-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13403	SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0061015	Biological Process	snRNA import into nucleus	Interproscan
GO:0061608	Molecular Function	nuclear import signal receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg93-4.4-1 global RNA-seq network