Gene detail

Detailed information of ctg897-0.0-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg897-0.0-1	UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN	chr4	96071183	96085882	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg897-0.0-1

CAACCTCGAGCTGTACCACTATTTTTTTTACACTGTGCTGCCCCTGTTACGCAATTCACTTAATTCAACAGAATTCTTGTTTTGTTTTGAAATGTCTTCAGCTAGTTTTGTAAAATACATATTAATATGATTAAATTAATTTACTTTAATTAATATTTCTAGCATCCAGCTGATGCCCCTGTGATTTCCACCAACCTGCCTAACAAATTTGATTTTCATTGGAATTCAAAGAGCACGTTACGACATGTTGTTGACCAGTTCCAGGAAGTGATCTCCAAATACCTGGACTTTTGGGATAACATGGACGAGATTGATAAAAACACGTGGGTGTTGGAGCCAGAGCAACCAAACTGTGCAGCTGTCCACCGCAGAATTGCACTAGATTCAAATGCATCTCTACAAATAGTTGTTGATCCACATCATCCTCGCATGCTCCCAGAATGTAGATTTCTTGGCGCGGATCAAGTGGTAAATCCATTAAGAGAAAAGCTGAACAGCAACCTGCACCTATGGGATGTGGAGTCATCATTGTTGAGTAATCTGGAGAAGCTGCTCGATAGGAGTTTTCCATCTCCGTCTAACTCTAAGAAAGAGGAATTCAGCATGGAGTGTGGTATCTGCTATGCATACAGACTTGAACGTGAAATTCCTGACAAGGTTTGTGATGATTCCCGGTGTGGCCAGCCATTCCACAGGAGTTGTCTGTATGAGTGGTTAAGAGTACTTCCATCCAGTCGACAAAGTTTCAATATGATATTTGGAGAGTGTCCATTCTGTGGCAAGGTAATAACAAAAACAGATTGCACATTAATTGTATTAATAATATAAGAACAGATGAGGTTTAGGCCTGTGATATATGTATATTTTGTGTTATTGTAGCTCTTCTCATAACATTAGTTTAACAAATACAATGATTGTAATATTCAGAAAGTAAATTATGAATATTAAGAACAGAACAGTGCACAGTCACTGGCATATGAATGAGAACTGAAATAGAATAGTTATTATAGTAAAACTACAATGACACAAAGAGGCTAAGTTTAATCATTCCGGTCTTGGATACAGAATACTCAATGTAACAAAACTTTGCTTTACATATTTTCTTAATCTTAGGTTGGTCACTGTCTGTTGTCTCCTTATAATACATTTTTTAAAATAAAATTCATTATAAAATTTAAAAAACCAATTTCAAATGAAGTGTATTTTTAGAATCAAGAATTATATTAGAATGACTAGCATTCATTTCTATTGCCGTAACGGGGCGGGACGCAGGTCAGTGGTACAGTCCTCACCAGATGGCGATCGATTCCTGCCCATTGGGCTATTTCTCGTTCCAGCCAGTGCTCCACAACAAGTGTAACAAAGGCTGTGGTATGTAATATCCTGTCTGTGGGATGGTGCATATAAAAGATCCCTTGCTGCTAATTAAAAAGAATAGCCCAAGAAGTGGCGACAGCAGGTTTCCTCTCTCAATATCTGTGTGGTTCTTAACCATATGTCCAACGCCATATAACCGTAAATAAAATGTGTTGAGTGCGTTGTTAAATAAAACATTTCCTTACTTCTATTGAAGTATTGATAAAATTGCTTGATTGTATAACCTTGAAACTAGATGCTGTAACGATACGGCGATACTATATCACATCTCGATACGAGGGCCATGATATGATACATCGATTCAGGATATCTTCATACATTCATGTTTTAATAATTTTTGGTAAAAAATGTTAAGCAGTACGAACATGCATAGTAGAGCAATTAAAATGTAATTTCATTTTATTGTCAGGTGACAATAAAACTTTTCTGTAATACAGCTTGTGTCATGTCTTAAATTTTGATTAAAGTATCGTATCGCGACCTCCCGTATTACAGCTCTAATTAAAACATAATTTTGAGAATACAAATGAACAACCTTCAGTAATAACTGTTAACAGCATTCAGAGTAGCGTTATGATACAAAAATGGTAGTCAAAAACAGGAAATCAATATCTCAGTAAATGTCTTATCCTATTTTATTTTTCAGTCTATTACTGTTAAAACGACTGTCCAAGGTTGACATTCAAAGCTTATACCGGCTATGGAGGACTGAAACTGCAAGGAAAC

Transcript

ctg897-0.0-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11793	FANCL_C	FANCL C-terminal domain	Domain	Interproscan
PF18891	FANCL_d3	FANCL UBC-like domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR026848	Family	E3 ubiquitin-protein ligase FANCL	Interproscan
IPR026850	Domain	FANCL C-terminal domain	Interproscan
IPR043003	Homologous_superfamily	FANCL, UBC-like domain 3 superfamily	Interproscan
IPR044037	Domain	FANCL, UBC-like domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13206	UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006513	Biological Process	protein monoubiquitination	Interproscan
GO:0036297	Biological Process	interstrand cross-link repair	Interproscan
GO:0043240	Cellular Component	Fanconi anaemia nuclear complex	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg897-0.0-1 global RNA-seq network