Gene detail

Detailed information of ctg849-2.5-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg849-2.5-1	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	chr10	87139335	87185022	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg849-2.5-1

ATGGAGGAACTTACGCAGAACAGCAAGAACAAAATGGCAGCCTCCATGTGTTCATGTTGCAGGCGAATGTTTACAAGACATCTGTTAAAATACTGCAGATATCCAGCTGTTCTTACACCTTATGCAGAACCTTGGTCTGTGGATGCACTCCGATATTCTTCTGTCTCAGCCTCTCGGACAGAACGAGCATCTACAAAACATCTCGACACATTACAAGATGATACCGACACCATAGTCATTCCTCGAAGGAAGAAACGTGATTCCCTGTCAATTCTGAAGGCTTTGGCGTCGACTGTTGGCACGGATCACCATGCTCCACACTACAAGTTCATAGACGACCCATATCTTATCCCCACCTCTAGCGCTCAGAAGAGAAACTTTGCCCTGTCGAAAGCCTCAGGGAAGAAGGCGGCACGCTACATCATTGACCATTATTCCGACTTCTTTCCAGAGGGTACTGAGAAACCTGTTATCGAGGCGTACCGGTCATCGGGGGAGGAGCAGTACACCCACCAGGATGCCAGTGAGGACGCCCTGCTGGAGCGGATCAACAAGAGGAAGGTTGCATACGCCACAGAGGTCTACAGCAAGATCAAACAGAACGGCTCGACCGTGTCGGAGCAGACTCAGCTGAAGCTGCTGGATCTGCTGTGTGTCTACAACAGTGTGGACCCGCCCCCAGCCATGCTCACTGACGAGTTCTTCTACCGCCGAGATCTGGGCGTCGACGACCGCAGGCCCATCAGGAAAGTCTGGAATGACAATGGCCTGGCTGAGCGGGTGTTTGATGACCTCACTGAGAAACTGCCACGTGCCTATAACAGCGTCGTGAAGGGAAGAGCAAAGCCTCATGTGATGATGTGGCTAGCTGAAAGATCGAACAACAGGGAATTTATTGCCATGTTTAACTTGTTTAGAAATGCTATTAAAGAAAAACAAGCCAAGTTGGAAGGGGTTAAGAACTCTATCCAGCAGACCATGAAGGAGTTGGATGTTTCCACGTACAATGCTTTGATAAACATCGCCTCCTACTACCAGGACAGCTATGATACCAAATGGCAACAGACTGTGCAACTGATGCAGGACATGCATGCGGCTGGCGTGCCACCGACCGTCGACACGTTCAACGCCGTGCTGTACACCCTGACCCGCATCTCACATTACAAGATGGCACCGTCGTACGCATGCCAGACTCTGGCCGAGATGAGTCAGTGTGCAATAGAACCATCTCTGACCACCTGGAGACACATTATCTTCATGTTTTACAACCATGATGAGATTCAGTCGCCGATGTTACAGATCATCATTGATTACCTCCAGAAGAAGGAATTCAGACCACAAGACAGAGAAGACTATGACTTTTTCTCCATAGCTATGACCAAGTGTTTCATCAACCTCCACGACATGGAGCTGGCGATGAAACTTGATGCGGTTCTCAACACTGGAGACAACATCGCCCTGCTTGGAGACGCATTCCGGGAGTCTATATATTATTCGTTTTTCTTTCGTCTGATCTGTATGTTTGAAACAATTGACAAAATTATGGACTACTACGAGAAGTTTGTGCCGCACATTTGGACGCCCAACCTGAAATCTCTGACTGATCTGCTGAAGGCGGTCGAGCTTCACGATGGATACAAGTATTTACCACAGATCTGGTCAGACCTCATTCTCTTTGACTACTTGAAGAAAGACTTTGTGCTTGGGCCGTTGCTGTCACTGATGGCGAAGAAGCCACAGACCGAGGAGCTGCAGAATAAATTTGGCGATATTGCTGAGTATGTCGTTACAAAATGGCAGGAGGACCAGGATGGGGGAGTTAACAACCCAATGGAACTGTCGGGGGTTGCCGTGGGTGATCTCATCATTGTTGCACTATATGCCAAGAGATTTGATCTGGCTTGGAAAATATTTTTGAAGTACAGAGAACATGGTCGATTGTTTTCTGGAATTATCAGTGAGAAATCGTTGGTGAAACTTGTAGATGGGTGTATTAACGAGGGAGATGCAGAGAAAGCCATAATGTGCCTCTCCATGATTCACGATCTGTCGTTTGCCAGCGTCGTGGAAACCAAGGAGAAAGTTCAGTCTCAGATGACACTCACAGACTTACAGAAGTACGTTAAATACCAAGACTAA

Transcript

ctg849-2.5-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13812	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR037387	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg849-2.5-1 global RNA-seq network