Gene detail

Detailed information of ctg79-11.2-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg79-11.2-1	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	chr14	15721538	15751274	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg79-11.2-1

ATGCGCCATTTGGCGTGTGCAGCTCACAGCGTCACGAGAATATGTCACGTGACCCAAGCATCCGATACACGTTTGACTATTACATTTCGAGGATTGGACACCAGGAGCCAAAATGGCAGAAACTATGGAGGTGATGAATCCATATCTGAAAGTCAGGAGATACAAACTACCGAAGGACAGTTGCCAACAGGAAATAAAACGCACGATGAATCATTTTCTCCGAGTGAGAATGGAGGATCTGAAGTCAGAATATCAGCAGGAGATTCAGATCACTTGATGGAACATAAAAACCAGTCTGAAGTCTTGAAATCTGAGCCTGTGCAAGAGAATATCCGAGATTCCGAGCATGACCCCAAAACACACGAACCTGTGCAAGAGAATATCGGGGATTCCGAACATGACCCCAAAACACACGGTGAATTATTTTCTGTAAGCGAGAATAGAGGATCCGAAGTCTCACCAGTAGATTCTGATCACTTGATGGAAGACCAAGGCAAGAAGCAGTCTGACGTCTTGCTGTCTCAACCTGTGCAAGAGATTATCGGAGATTTCGGACATGACCCAAATGCTAGCACGTTTGACGCTGCTTCAAAGGAGGAAGTGTGTGTCGCTGTGAATGAAGCAGAGGACAAGACTGAACCGAAAACATCACAAGAGGTAAATATATCAGATGTTTCCCGTATCAGTCCATTACACGTCACTTCAACATGTGAAACATCACAAGAGGTAAATACATCAGATGTTTCCCGTATCAGTCCATTACACGTCACTTCAACATGTGAAACATCACAAGAGGTAAATACATCAGATGTTTCCCGTATCAGTCCATTACACGTCACTTCAACATGTGAAACATCACAAGAGGTAAATACATCAGATGTTTCCCGTATCAGTCCATTACACGTCACTTCAACAAGTGAAACATCACAAGAGGTAAATACATCAGATGTTTCCCGTATCAGTCCATTACACGTCACTTCAACATGTGAAACATCACAAGAGGTAAATACATCAGATGTTTCCCGTATCAGTCCATTACACGTCACTTCAACAAGTGAAACATCACAAGAGGTAAATACATCAGATGTTTCCCGTATCAGTCCATTACACGTCACTTCAACATGTGAAACATCACAAGAGGACGACCTTCTACCAGTTCCAGATGGCCAGCCTTTAGACTTGCTACTCATTGGTCGAACGGGACATGGCAAAACCTCGATATGCAAGACGATCCTCGAAAGCACAGATACCATTGCTAAATGTACAACAGAATGTTTCCTTATTGAGACTATCGTTGGCCGAAGGCTGTTACGACTTCTTGATACCCCAGGGACCATCGACAGCAAGAAGGGTGGCGTCGCGCTGAAGGAGGTGGCCAACATATTCACTCTAAACCCCAGCGGTTTCCACGCCATTTTGTTTGTCATAAAATATGGCAGCAAAATGTCAGCTTATGAACTTGGGCTAACTGAGATGCTGAAAGTGTTGTTGGGAGAAGACGTGTTTAGAAACTACGTCATGCTTGTAGTTACCCATGGCGATAGATTCGAAGCCGACATGGAGAAGGGTCTTGTAGCTGGTGATATTAAATCCTATGTTGATCAACACGACGGTCGTCTCAAGGATCTGTTGACGGAATGTAAACACAGAATGATTCTCTTCGACAACACAGACGTGGACCCGGCGAAGAAACGAAAGCAGGTCTGCGAGTTGGTCTCCATGGTAGATGAAATTGTGAACAGCAATGATGGTAAACGATACGACAGTTCCTATTTTAAACTGGCCAAGAAGGAAACTGAGTTCCAGACCTCGACCACGCTAACTGGCTCGGAAACGGACGAAGAGAGGCGGATCCTGGAAGAAGGCATCAGAGGGCAGGTGGGCCAGGTGGTAGCGGAGCAGATTAAGAAGGACAACAACTGGTGCTTCCCCGCGGATGCCTTGGTGCGGCTGTCATCGGGGCAACACGTTACCATGGCGAGTCTTCGAGTTGGCGATAAGGTTCTCAGCTGCGCTCACGAAAGCAAATTGGTCTACAGCGAAGTATACATGTTCGGACACGTCGAGAGTGACGTCATGTTGCCGTGCATCAAGATACGGACCTCAGACTTCAGCATCTCCCTCTCTCCAGGCCACTACGTCTTTGTCGGTGACGAGCCAGCGTCGTCGATGACGCCAGTTCTGGCTCAGAACGTGAAGTGTGGCGATCGCGTGTACGCCTGTCGCTCGTCTCACAGTGTCGACGTGGAGCCCAGATCTGTAGAACTAGAACCCAGTACTGTTATTGAAGTTCAGTCCACCGTCTGTCGTGGAAAGTATGCACCATTTACGGAATGTGGGACCATTGTCGTGGATGACATTCTAGCATCTTGTTACGTAGAGATTCTGCCGCCTTACATACTGCACTCTTCCACCGTAGAGCAGAAATTGCCAGAAAAGGTCCCAGAACAGCGCAAGGCTGAGTCAAACAAAATACGCTCTAAGTATCCAGACAGAATACCTGTGATTGTTGAGAAGGATGCCAAGAGTCAGATTCAGAACATCGACAAGAGGAAGTTCTTAGTGCCCAATGACATTTCTGTTGCTCAGTTCATGTGGATAATCCGCAAGCGGATACAGCTCGCCTCAGAGAAAGCCATCTTCCTCTTTGTGGGAAAAGTTTTGCCACAGTCCAGTGCAAGCATGGGTCAAGTGTATGAAGACCACAAAGATGACGATGGTTTTCTCTATATCGCCTACAGTGGAGAAAACACGTTTGGGGAGTTACAGTTACAGATCTATATTTAA

Transcript

ctg79-11.2-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|ATG8

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01079	Hint	Hint module	Family	Interproscan
PF02991	ATG8	Autophagy protein Atg8 ubiquitin like	Domain	Interproscan
PF04548	AIG1	AIG1 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001657	Family	Hedgehog protein	Interproscan
IPR001767	Domain	Hedgehog protein, Hint domain	Interproscan
IPR003587	Domain	Hint domain N-terminal	Interproscan
IPR004241	Family	Autophagy protein Atg8 ubiquitin-like	Interproscan
IPR006141	PTM	Intein N-terminal splicing region	Interproscan
IPR006703	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036844	Homologous_superfamily	Hint domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000045	Biological Process	autophagosome assembly	Interproscan
GO:0000421	Cellular Component	autophagosome membrane	Interproscan
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005776	Cellular Component	autophagosome	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006995	Biological Process	cellular response to nitrogen starvation	Interproscan
GO:0007267	Biological Process	cell-cell signaling	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016236	Biological Process	macroautophagy	Interproscan
GO:0016539	Biological Process	intein-mediated protein splicing	Interproscan
GO:0016540	Biological Process	protein autoprocessing	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg79-11.2-1 global RNA-seq network