Gene detail

Detailed information of ctg723-1.2-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg723-1.2-1	SIN3B-RELATED	chr5	4292950	4345599	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg723-1.2-1

TTTCAGATTGACTTAGGACGGATCTACACCACCATTCTACATGTGACCGCCAGCCACACTGACGATTACCAGTGGCAACAGACATCGCCGTGGTAACCACCCTGGAAATGATGCAGCGTTGTCTTGACGACCAAAGAAGAGTTAATCCTAGTGAATCGTACCCAAGAGTTATTGCCCCTGGAGGCCAGCGGTATGGAGAAGTTGGAGAAAATCTGACAAGTGGAATGTCATTTACCATGCAGGGCTATCCACCGGTCAACCAGAGTGGAGGCCACCACTCCCCCTCAGTGCACCACCCTTTGTCTCACCCTGGCATTCCACAACAGGCTCCGCCCTCGGCCCCGCCCTCCATCACCCAGCCATCCATCTCGACGCAGGCTCAGGTATCGGCGGCACAGGGGGCGGCCCAAGTCGTGAGTGACATGTTTACACATTCGGCTCAGGTTCAAGGTCAACAGCAGCAGTTTCAGAGATTAAAGGTCGAGGACGCACTGTCGTACCTAGATCAGGTGAAGCTGCAGTTTGGAAACCAGCCGCAAGTCTACAACGACTTCCTCGACATCATGAAGGAGTTCAAATCTCAGACCATTGATACGCCAGGTGTAATCAATCGCGTATCAAACCTCTTCAAAGGTCATCCTGACCTCATTGTGGGTTTCAACACCTTCCTACCACCTGGCTACAAGATCGAGGTCCAGTCTGAGGTCATCAACGTCCACCAGCCGGGTCAACAGGTCATCTCCATACAGCATTGTGTCACTCCCATTGCACCACAGAGTAATCGATTCCAGGGCCAGCCAGAAATCTACAAACAATTTCTCGAGATTCTACACACATACCAGAAAGAACAGCGCAACCTAAAGGAAGTGGGATCAGTACAGGGCCTCGTTCCCCCGGGTTACAAGCCGCTGACGGAGGCGGAGGTGTATGCGAAGGTGGCCAAGTTGTTTCAGAACCAGGAAGACTTGCTCAACGAGTTCGGGCAGTTTCTACCCGATGCGAACGGCTCGTCCTCGTACCTCGCCGCTTACGTTAGCGTAAGTAACTTCACAAGCGACTCTGTGCTGGGCGTGCGTAACGACCACTCGTCCACAGTTAAGAAACCAGGTTTCAACAACAAGAACCAGTCGAGTAAGAGCAGTCAGATAAAACGAACGCTGTCTGGATCGCAGGGCCCTATCAAGAAGCTCAAGACGAGCCACCTGAAGGACATCTCACTGGCGGAGGCTGGCAAATACGGGACACTCAACGAGTTCGCCTTCTTCGACAAGGTGCGGAAGGCGTTACGCTATCAGGAAGTGTACGACAACTTCCTGCGATGTCTCGTGCTCTTCAACCAGGAAGTGATCTCCAGGTCGGAGGTCGTGCAGCTGGTACAGAACTTTCTCGGGAAATTTCCCGAACTCTTCAAGTGGTTCAAAGATTTCCTCGGCTACAAGGAGTCGGGCGGCAGTGTGGAGTCCATTTCTCAGAATGCCGTCAAGGAACGAATCAGTGGAGACCTTGCTATGGATATTGGTAAAATGCCGTCAAGGAACGAATCAGAGGAGACCTCGCTATGGATATTGAATGCCGTCAAGGAACGAATCAGTGGAGACCTCGCTATGGATATTGTTAAAATGCCGTCAAGGAACGAATCAGAGGAGACCTCGCTATGGATATTGAATGCCGTCAAGGAACGAATCAGTGGAGATCTTGTTATGGATATTGATTTTGCCACGTGTAAGCGTTACGGTGCCAGTTACCGGGCCCTGCCCAAGTCGTACTACCAGCCCAAGTGTTCTGGAAGGACGGCGCTCTGTAAGGAGGTTTTAAATAACACGTGGGTTTCCTTCCCCTCCTGGTCGGAAGATTCCACTTTTGTCACGTCACGCAAAACACAATACGAGGAGCATATCTATAGATGTGAGGATGAGCGATTTGAGCTTGACGTTGTCATAGAAACGAACCTCTCGACGATTCGGGTATTAGAAGCAGTCCAGAAGAAAATGTCTCGAATGACGTCCGAAGAGGCGGCCAAATTTAAACTGGACAACACACTGGGCGGGTGTTCGGAGGTCCTGCACAGAAAGGCCATACAGAGAATATACGGTGACAAGGCCCCCGATATTATTGATGGTTTGAGAAAGAATCCCGTGGTGGCAGTTCCTCTAGTACTGAGACGGTTGAAGGCTAAGGAGGAGGAGTGGAGAGAGGCCCAAAGAGGGTTTAATAAAATCTGGCGCGAGCAGAACGAGAAATATTATCTGAAGAGTCTTGACCACCAGGGCATCAACTTCAAACAGAATGACATCAAGTCGATACGGTCAAAAGCCTTGTTGAACGAAATCGAAACTATATTCGACGAGGAGCAGCTACAAGAGGGGGGCAGTGAGTCGACGTCGTCGGAGCCCCACCTGTCTCTGTTCTACAAGGACAAGTCAATCATCGATGATGCAGCGTCACTCATCATCCACCACATGAAGAGACAGGCCGGAATTCACAAAGAGGACAAGAGGAAGATCAAACAGCTGCTGTACCAGACACTGCCCGATCTGTTCTTCACGCAGCGCAGCGAGCTTAGTGACGACGAGGCTGACAAAGACGAGGACATGGACACGGATGAGATTAAGAAAGAGCCGGAGATAAAGATGGAGGAAGGGGAGACAATTGCTGCAGACCCCGCTGACAGCCGAATTACGCTGAACGGCAACAAAGATGAGAAACCTAAAGACGTTGTCGTCAAAACGGAGGACGACACACCGGTTGCTCCTGACTCGCCCGTTGTCAACGGCAATGATTATTCGTCCCCGACAGAAACTCCAGACAGATCGACAGATGATGACCTGTACACCCTGTTCTATGTGAACAACAACTGGTATTTGTTGCTGCGACTGCACCACCTGTTGTGTGAGCGACTTCACAAGATCTATATCCACACCCAGAAAATCATTGAGGAGAACGGTCACTGTCGACGCGAGAGGAAGGAGTCGACGGCCACGTCACTCCGACTGCGCACCCCGTTTGAGATTGACCCCGTCGACTATTACCAGTACCTGCTGGACATGGTGAAGAGCCTGTTGGACGGTAACATCGAGTCGGGCCACTATGAGGACCAGCTGCGCGAGATGTTCGGAATCCACGCCTACATCGCGTTCACCATGGACAAACTGGTGCAGAACTCCGTCAGACAGCTCCAACACATTGTGGGTGATGAGTCGATACAGAAGGTGATAGAACTGTTCAGTGAAGAGAAGGCAAGTCACGCGACTGGTGGTCGCCTAGCAACGCAGCACCAGCGGCAGTCGGCGGAGGCCAACTACCAGAGACGGGCAGAACAGCTGCTCGCCGAGGAAAACTGCTTTAAAATAATCGTGTACCAGAAGGACTGCCAGGTGACGTTTGAGCTGCTGGACACGGAACATGACCAGTCGGACGACCCGGTGGAGGTCGAGCGGTGGTCGGAGTACGTGGAGCGGTACGTCGCCCAGGACGACACCATCTCTGACCAGCTCAAGGACCAGCTCACCAAGAAACCCGTCTTTCTGCCGCGAAACGTGCGTCACACTCGACAACACAATAAGAATCAGAAATCTCGCGTGGAGAGAGAGATGAAGGACAGGGAGGAGCAGCAGGATGGAGAGATGGACGCGGCCGAAATGAGGGAGGAAAAGACCGACACAGACAAAGACTCGTCGCGGAGTCGGCCGGCGGGTGACCTTGACATTCTGGACAGCACGGGCTGCAAGTTCAACGTGAACTCGTTCAAGATGGTCTACGTGGTGAACTGCGAGAGTTACCTCTACAAGAGGATGGCACTGAACAGAGCCAAGGAGTCTCACAAGAAAGTGTCTGTGCGTCTTCACGAGAAGTTCATGTCGTGGGTCAACAAGTGGTGCGACGTGAACGTCACGGCGGAGGAAGAGTCGAAAACGACGCAGTGGTTGCTGGGCGATGTCGTCGACTCGAAACACTGTCAAACAACGTGCAACAAGATCTACCGGCCCGATAGGGCGCCGTATTACGAATACCACAAATACACCGTGCAGTCGCTCGAACCGACCCCAGAACCCGAACCAGTGACCGAATAA

Transcript

ctg723-1.2-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02671	PAH	Paired amphipathic helix repeat	Repeat	Interproscan
PF08295	Sin3_corepress	Sin3 family co-repressor	Domain	Interproscan
PF16879	Sin3a_C	C-terminal domain of Sin3a protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003822	Repeat	Paired amphipathic helix	Interproscan
IPR013194	Domain	Histone deacetylase interacting domain	Interproscan
IPR031693	Domain	Sin3, C-terminal	Interproscan
IPR036600	Homologous_superfamily	Paired amphipathic helix superfamily	Interproscan
IPR039774	Family	Transcriptional regulatory protein Sin3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12346	SIN3B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000118	Cellular Component	histone deacetylase complex	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016580	Cellular Component	obsolete Sin3 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg723-1.2-1 global RNA-seq network