Gene detail

Detailed information of ctg676-7.1-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg676-7.1-1	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	chr9	34885674	34907991	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg676-7.1-1

CGACTTTTGACCTCATGAGGCTGGGAAGTCGAATTTTAATGTAAACCTGCAAGCGTTATAATCTGAATTTACAGATCACATTTTGATTTTTAAAAGATGGATGCTGCAACAGAATTACATTCTGTTGGAAACAAAGGCGATGAAGTAGCGCCCATAAAGGAGGAGGCAACTGCGAAGGAAGCCGATGTCAGCACAGTGAAGATACTGGGTGATACAAACAGCAAAGGCATCATCTCTCTGATCCCAGTAAAACCAGGCTACGCTTGTATCAAGAGACAATACATAGCCACAAAACAAGCTGTGCAACCGCAAGTACAAGTTGAATCAGCTACAGATGGGGAACCATTGGCCAAGAAACAGAAACTGAAAGGTTGCAATAAAAGCAGACCACGCAACAAACGCGTAGAGCCAGCAGATAAAATGTGTCCAGCAATCGTCAAAGAAGAACCTTGTGCATATGGCGACTCGTGCAAATTTCAGCACGATGTTGCCAAGTTTGTAAGCTCCAAAATACCAGACATTTCCGACGACTGTTACATGTTTAAGACTTACGGCAAGTGTCCCTGTGGAGTTCGGTGTAGGTTTTCCAGCTGTCATTTAGACGAAAATTATAAAAACATCGTCAATGAGGAACTGTTTGAGAAAACGTCGCTGAAAGATCAGACACTGAATACATTAACGAAAGACCTGCAGAAGCTGCTGTGGAAGAAGAAGTACAACTTCGACAAAGCCGATTTGGTTATTTCGAAGAACTTTCAGTGCATGACGGTTGACGAGAAGGTTCAGAGTGGTCTGTGGGAGGTGAAGTGGGACGACGGACACCTGAGATGTTTGTCGGTGGTCGACTTGAAAAATCAAAACATCGGACAGATTGCAGGAAAGCCTGTGGGATGCATTACCAACGAAGATGTGATCAAGTTACGTCCTTCGGAAAAGAAAACGATAGACTTTGCTAAGAAACTCTACTTGGCACCTTTAACAACAGTGGGCAATCTACCATTCCGAAGATTATGCAAAAAATATGGTGCTGACATAACGTGTGGAGAAATGGCGATGGCAACCAACATACTACAGGGCAAGCAGTCCGAGTGGTCTCTGATAAAACGTCATTCTTCCGAAGACATCTTTGGGGTTCAGTTGATAAAACAGCATTCTTCTGAAGACATCTTTGGGGTTCAGTTATGTGGAGCGTTTCCTGATACGATGACCCGATGTGCTCAACTGCTGAATGAAACGGCACAGATAGATTTTCTTGACATCAACCTGGGCTGTCCCATAGATCTGGTTTACCAAAAGGGAGCTGGATCTGCCTTGCTGGACAAACCGAACCGGCTTGAGAAAATAGTGACTGGTATGACATCCGTTCTTGACGTGCCGCTGACGGTGAAACTGAGGACGGGCATCTCCAATTACAAGAACGTCGCTCATCACCTGCTGCCCAAGCTACGCGACTGGGGAGTGTCATTAGCTACATTACATGGGCGATCAAGAGAACAGCGGTACACTCGTCTAGCTGACTGGGAATACATCAATTACTGCAGCCAGGTGGCAGAACCTATGCCCTTCTTCGGTGGTGGAGATATTTTGTCTTATGAAGAATACTACAGTAATCTTGATCAAACTGGTGTGTCTGGTATTATGATTGGAAGAGGGGCTCTGATCAAGCCGTGGATATTCACTGAGATCAAGGAGCGGCGACACTGGGACATCTCGTCCTCAGAGAGACTCGACATTCTTAAGGATTACACAAACTACGGGCTGGAACACTGGGGCTCAGACTATCAGGGAGTCGAGAACACGCGCAGGTTCCTACTCGAATGGCTGTCATTTTCATGCAGGTATATCCCTGTTGGACTGCTTGAACGCCCACCACAGAAGATAAACGAACGCCCACCTCAGATCGTTGGCCGAGATGACTTGGAAACGCTCATGAGTAGCTACAACTGTGCTGACTGGGTCAAAATAAGTGAAATGCTTTTGGGACCAGTTCCAGTGGAATTTAACTTCCTGCCCAAGCACAAAGCTAGTGCGTTTCCATGAACAGATATAGTTGGTTTTTCTTTCATCAAAACTGTTACATTGTATGACACAATGGGATGACATCACTTGTTTCCATTAACTTTGTTTCTCATGTGTTTTTTGTACATTTGGTTGTATCTTTCATCAACATGTGAAAGTCTGTTAATGAAATATGAAACATTTTTAATCAGTCATTTGTAATGAATTATATACTTAAAATATGTGGTTTGACCTTGTAAATTTATTTTTTTAACAGTTTCTCAGTCTGTGTGTTTGAGTATGATCAAGAATAGAGAAATGAATTATAATAATGGTCAAACAAGAATGTTGAATGAATTGAGAATTGCTGAAGATGGAAACGTGATCTGTTTATGGCAATGAGCCACATTGTATGTTGATCGACAGAAGTTTTAATTTTTAGTCTACTATTTAAGTTTACATATTAGTAATTACCAGTACTGTATTTGAGGAAGTGGTTTGAAGTTGAAACATGGATTTATAGTAGAGGGGGGCCTCCTTTTTCTTTTTACAGATAAATTTGTTTGTACAGAATTATTATCTTATTATATCAAGTCCAGGGCTGTAGCTAGGATTTTTTGTTTTTGGGGTGGGTGGGGGATGACTGAGTAGTTAATAGTCTAAAACTCCTTAAACGGTTAAGAAGAACCTTTTCTTTAAGTTTCTCTAATTTTTTCCGGATTTTCCCCGCCCCCCACGAGCTACGGCCCAGAACTTCAGTATGGCATTTGAAATGGGTTTTTGCTAGTGGATTAAAATTCACTACATTCTTAATTTTAATTGTTCTTTTTACAATTTTTGTTATGACACCATGTATGATTAAAACACCAGATATAGTTAATGATGGTCATCATGTACACCCAATCCATTTTTTGGGAGGGTTTAAATTTGGCTGTTTTTAAGAAAATATGCAAAAATTACACAACGTTAACATTATTCATTTAATTTTTAATTAAATTGAGGTATAATTAAAAAAAAAAAAAATTCATTGTATAGAGATTATTTTGTGAAATAATAGCAAATATAATGTAGTGAGAAAAGAATGAAAAACAACGTTATAAATATTATTATATTTGCTAGTAGTCATTATATAAAGAAGTGTATATGTAGATAAGATTTTATTTGGTACTTAGGTAGCAGACATTTCATATCAAAATAAGTTTGTTTTATCAGTAACTCACCTTAAACTTAAAAGCCCAGTGGTAAAGCGCTCACTTGATGTGTGATCGCTTTGGGATCAATCCTTGTCATTGAGTCCATTTGGGCTATTTCTCATTCTAACCAGTACCCCACGACTGGTATATCAAAGACCATGGTGTGTGTTATCCTGTCTGTCTGATGGTGTATATAATAGATCCTTTGCTACTAAGGGAAAAATGGAGTTGATTTCTTCTCTAAGACTATGTCGGAATTACCATATGTTTGACATCCAGTGGCCAACAATTGGTGAATCAATGTGCTCTAGTGGTATCGTTAAACAAAACAAACAAACTTAAAAGTTATCACTGATTGTACATACAAGTTCCTGTTGTACTGTAATACAGGTTTGACAACCTATAATATCAAGGCTACTTACTGGACTACAGTTTATCATAGTTGACAGTATAATGCTTTATCTTTATCCAAAGTGTAATCTTGTTTTACATTCAATAAATGTTTTGTTTCTTTTGTAAATAAATATGAAATTCATTCAA

Transcript

ctg676-7.1-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01207	Dus	Dihydrouridine synthase (Dus)	Family	Interproscan
PF18044	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR018517	Conserved_site	tRNA-dihydrouridine synthase, conserved site	Interproscan
IPR035587	Domain	DUS-like, FMN-binding domain	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR041367	Domain	E3 ligase, CCCH-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45846	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg676-7.1-1 global RNA-seq network