Gene detail

Detailed information of ctg626-2.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg626-2.4-1	RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C	chr6	42973532	43047956	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg626-2.4-1

ATGTTGATAAAGAGTATATATGTTGAAAGCAGTGATAGCTCAGATGAGATGTATCAAAATACTGATATGATCCCTGGTATGGGGATGGCTGTTCCTATAGTGTCCAGTCCAAAGCCGAAAGCATCAGAAAGATATGGATATTTATACAAGCAAGGAGGGACCCCCCTCTATGTGGTGGATGGCAATCTGAATGGAATCCACCATCTGAATGAGATTATCCGGCCGTTGGTTCTCCCAGACCTTCAGCAGATTGGCGGCGGGGCAGTTCTGCAGGATGACAATGCCAGACCCCACCGCGCCAGGGTGGTAACGGACTTTCTCAGACAACAAGGTATCGCCAGGATGGATTGGCCAGCATATTCGCCTGACTTGGTCCCAATAGAGCACGCCTGGGACGAATTAGGCAGGAGAGTTCGGGATAACCATGCCCCTCCGGCCAACCTTCATGATCTGGGTCAACTTCTTATGGCAGAGTGGCAGGCCATTCCCCAAGAGTTCTTCAGACGTCTGATCAACAGCATGAGAGTGAAGGCAAACAAGGGATGGCAGAGGCGTTGGGTTGTATTCAATGGCTCTGATTTAAGATATTACGTCAACAATAAGAGCCAGATATCTAAGAGAGTGATACCATTATCCTGTATGCAGGAAGTGAAGCATGATGTACAAAGTAAAGACAAAGATCGATTCAAGTTTATCCTTGTTACAAACCTGGGTGCTAAAGGAAGGTCATTTCAGTTCTACTCTGAAACATTAGATGACTCTATAAACTGGACCAGTACTTTGATGGTTGCAATCAATAACTATCAGAAAAATGTCGTTTCGGACGTTTCTGTCAACTCCACTACAGCACCAGACAAAGAGGATTACAAGTTACAATCACCAGTACACGAGATTCGCATGGAGCTGGCCTCTGTGAAGAATGTCCCCGGCCACAGAAAATGCAAACTGCAACTGACAACTAACTATGCATCTTTCATCCTGGCATTCGATAATGTCACTGACACCCTGCTGTGGAAGATGGCAATGGAAGATGCTATTGCTGAAGGCCTGGCAGATGACAGTGTTTTAATGATGGTCTACAAGAATGACAGCAATAAGATTTGTGCCGATTGTGAAGACCCCAGTATTCACCGCATGTTTGACTACAGAATTTCTAAGATACGATCACTGAGAATGGACACCCGAGTGTGGACGCCAAGCTTGATAGAGATGATGATTTCGATAGGCAATGCCAATGCCAACAACTTCTGGGAGTTTGACCTGCTGCCTGAACTTAAGATAGAGCCCAGCTGTAACGATATGAAGAGAAAGCAGTTCATCCAGGAAAAGTACAAAGACAAGAAGTTCATCAGACCGCATCGGCACCAGCATGATGCCCGTTTTCTTAATGAGGAGCTGTTGCGGCTTGCCGAGACCGATCAGTTACTCGATGTGATGTCAGTATATTTGTCTGGTGCAAACATTAATTATAAGAAACCTGGTAATACAGATGAAGAACATGGCACTGCTTACCAAATAGCAAAAGAAGCAGGACAAAGACTTGTTATGGAATTTCTCTATCAGAATGGTGGTGACAGTTCGGCGTCTGACCTAGAAAATTCCGATGATGGAAGACTAAGGGAGGATGTTAGATTGCAGGGACATTTAATGAAGACTGGCCCAAATAACAGAGGCTTTGAAAACAGATGGTGCATTCTGGAACATGGTGCTTTAACATACTACGAGAAAATGGAGAGCACCAAGTCTAAAGACAGCATTGACCGCAAGATGATTCTCTGTGTCCAGGAATCTACTGCTGGCAGTGAAAGACAAATTTCAGCCTTTGAACTGAGTACCAAGAAAGGAGCAAACCGTATTTATTTATTTGGTGCAGAGAACAAGTCTGAAAGAGGACTGTGGATGAGAACCATTGCCAGGCTTATTTGCCCAGTCTCTGTGATGGATCATGTTGGAATGATGGATTTCTCTCTGGCTGGTAACTTCTACATGAAAAACCTCATTACAGAAGATTCCCAGCTAGAAACTATTGATTTGAGGAAAGCCAAAGGAATCAAATATGCCGACACTGGGAGCTGTGAGTCGTGTATGGAACATGGCAAACACTTCGTCATTGATACTCATGGAAGGCATCTGTATTTCCAGGCAGATCTGGTGCGGGACACCGAGAAAGCATTCACTGCACTTGAAAGTGCTATTAAAGTGAGTGGGACCAGTCTCTCTGACCAGCAGCTGACGGCCGATGATGTGCCGGTGATCGTCAATAACTGTATTGGACACATTCAGGTCCACGGAATGAAAGATAGAGGTATTTATCGGGAAGCTGCCACAAACAGTCGTATAGAGTCATTACTTAACAGACTGAAAGCAGATGTTTACTCGGTCAAGTTGGAAGAGGCGAGCTGTAATGAAGTAGCGAATGCCCTGAAAAGGTTTTTTCGCCAGCTGGAAGACTCGCTCTTCACTCGAGACCTCTATAAAGAGTGGATACGAACAGCAGCCATTACAGACATGAACAACAAACTTGCATGGTATAGATATCTGCATGATAAACTGCCAATAGTCAACAAAAATACACTGAAGAAACTCATTCTACATATGTGGAAAGTTTCTCAGTATTTCCAGGCCAACATGATGAGTGTAGAAAACCTGGCCACTTGCTTTGCCCCATCACTGATGAGAACCGATTCAGACAATACCGGTTCAAGCCATGCAGCGGGGCTGCCTCTCGAAATGGCTGTGGTTACTGATCTCATGAAGAACCATGAGTACATCTTTCAGATTGAGGCTAGTGATCAGAAAGACAGCTTGATAGACGAAGCTGCAGCCAAGATAGCAAAGGCCAATTTGAATCATGCAGGGAGACCGCAATCGTGTGTGTTTAGTGACATGATGATTCCATTTCATGTGATGGACAGCAATGGACAGAGTATCAATGTTAAGGTCCATAACACAAACACAGCGGCAGATATTCTGTTGCAGCTTAGACGCAAGATACCCAACTCGGAAGATTATGTTATTTATGAGGTGCTAAAGAGAGGTGCAATAGAACGCCCGCTGTTGTCGTTTGACTACCCACTGTCAGCCATGATGGAATGGCAGAACTGGGAGGATGACATCCGATCAGAAGTGAAATTCATTGTGAAATCAAACAAAACACTAAATGAAATTGCCAGTGCTCATGATCCAGGAGCATCGCTGTTTGCAGAAATAAAGTGCTGTGCACCTGGTGAAAAGAAACTCAAGAAGATGGCCTTCAAGTTTATCCAGGCAAAACTCACCAGCTACAAAGATGCTAAATGTATAACCTTTGTGGTGAAAGGAGAAAAGCAGAAGAGTTGGTTTGGCCGCTGTATGGTGTTTCTAAGCTCGGAGGAGAAACTTAAGTGGATGGCAGCTCTAATGACTGCACAGCTTTCTGGTAAGAGTCTCACATGA

Transcript

ctg626-2.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF00620	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00788	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF01412	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159	Domain	Ras-associating domain	Interproscan
IPR000198	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001164	Domain	Arf GTPase activating protein	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR008936	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR037278	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR038508	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR052227	Family	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45899	RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005547	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg626-2.4-1 global RNA-seq network