Gene detail

Detailed information of ctg578-1.8-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg578-1.8-1	LISH DOMAIN-CONTAINING PROTEIN ARMC9	chr15	5309105	5353093	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg578-1.8-1

CAAATCTTCAGTATTTTTTAATTGACTGGTATTCGAGATCGTAACGGATCATTATTTTGTTTTCGGTGTAGCGTGCCATGTTTCCAAATATTTGGAACAGATATAATTAATATAGTTTGTATTGAATCATTTGTTTAATGTCGCTACAATGGAGTGGCAGTCTAGTTGAATTATTTGTTTGCCATTAAGAATGACAGACTAATTATGTCTGGAAATCTTGCTGTGGTTGGTTTCGAAGGTGAACTCAACTCGATTGTGAAAGAGTATTTACTGTTCAACACCTTGGAGAAGAGTTGTCTGGTGTTTGAGAAGGAATGCAACGAGAAGGGAAAGCCTATTTCACCAACAGATGGCAGGGCACCAACCGACCAGAAGCTGCTATCAGTGCAGAATGAAATGCTTCAGAGTTACAGAACTGGAAATCATCAACCATTCCTAAAACTGTGGAACGAATATTTACCTGCAAGCTTCCGCAATGACGACTCTGTAGCTCAAAAACTGGAATTTTATCTTCACATCTACTTTGCGATCTACCCCATAAAACATGGCCACACTCGTGAAGAAGCTGATGCGAACATGGTGGAATTTAAACAATTCATCGAGACCCGCGGCTCCACTCTCAGTCAGACGACAGAGTTCCTTCCCTTTTACGCACTTCCATTTGTTCCCAATCCAAAGGCACACCCGTCATACAAGGAGCTGTTTTCAGATAGTTGGTCCGAAGATTTAGAAAACAGACTGGACAAGTTCATCTCTCTCGCCCTGAAGTCTGCACCACAGCCCAGATTGTTTGATCTTTATCGCAGTGCGGGAGGCGATGATAAGAATCTGCACCAGGAAAACACCATTCTTCAGCAGAGAGTGGCCGATGCAGAAAAGAAGACGATGACGTACATCAAACGACACAACAAAGTGCAGGCCGACTACCACAACTTGATTGGAATCACGGCTGATTTGGTTGATGCTCTGGAGTCGACGGTTCAAGGACATACGATAAGCCCGGAGTATCTTCAGCAGCTGTGTACGCGGCTGTTCAGCGCCCACATGCGGACGTCGGTCGAGTTCCGACCTGGCACGGCCGGGGATGTGCTCCGAGCATCCGTCGCTCCTCAGATGCGCCCGGTGACAGTGGCAGAATACCCTCCACTGGATTTTGTCAAAATAAAGAAGGACTTGATGTCTGGAGTGGAAAGCAAAGTTGCCCTGTTACTGCAAGCTCTTAGATGGCGTCTCACCCGATCCCGCGTGGACCAGCGTGATGCCATTGTCACTGCGTACATCAACAACGACCTGCTTGGATGTGCAAAGTCGGGAACTCAGAGGGAAACCATTCAGAAACTAGTCACGTCCGACTCGGAGATCGTCCGGGAATACACGGCCAGACTCTTCAACGCATTCGCCTCTCTATCTGTTGGTCGGACGTATCTTGCACAGAACCCTGACCTAATGCCAGCGTTGATGCGAATCCTGCAGGGAGAAGACAAGGAATCGATGACCCGTGAAATGGTTCTCGGAGCTCTTCAGAAACTGAGTCTCAGACGGGCGTTGCAGTCTGCGATGATAGACAAAGGTGTCATTGAGTGGCTCGTCTCGGTGCTCGAGGACAACGACTCACTGTCGGACTACACTCTCGAGTACTCCGTAGCACTGCTCATGAACCTCTGTCTCAGAACATCCGGTAAACAAAGGTGTTCCAGGATTGCCAGACAAGTGTTGAAAGTTTTGAGTGATCTGCTGGGACACGAAAACACTGATATTCGTCCCTATGTAAATGGTGCCTTGTACAGTATCTTTGCCATTCCATCCATCCGAGATGAAGCTAAAGCTATGGGCATGGAGGAAATCTTGAAGTGTTTCATCAAGGAGAATCAGCATGACACTAACCGACAGATTGAGTTCATCATTAAACAGCTCAACTCCTCTGAAAATGTTGACGATGTTGACTCTGACGATGAGGAAGAGGAAGACGATGAAGAGGAGGACCAGGATGCGCTGGAGGCAGACATTGATAAAGACGAGGTTGTTCGACCTCAGCCGGGCGAACTGGCTGGAGAGGGTCTCCTCACCAGAGATTACTTAGGCCCACCGAGCACGGCAAAGGCTAGGAGAAAACATCGTCCACTTCAGCGACCTGTGACCCCGGGTCAACGACGAGCTGCTGACCTCTCTGTGTACACAGCACCAGCTCCGATGCTGCCACCTGTTAGTCGACCAAGCACGGGACACAAAGACTTGACAGCGCGACCGCCCACGCGAAGTGGAAGTCGACCCAGCTCCCAGCAAACTGCTCAAGAAGTTCTGTCTGTCCGTCCTGCTAGCCAGTCGAGTGACAAGTCCATGCGTCCGTCCACAAAAGCGTTGGAGAATCTAGGACCTAACGCAGATATCAAGGAGTACAAAGCGGCGTTTGGCTCGCGACCCCGCCTGATGCGGACGCCGGACATCTCCGGCCTCAAGCGGCCACCCAGCCAGCGGTCATCCATCTCTAAAGATCCCCCGCCTCAACCACAGTTCTCAGAGTCCGGCCCAAGACCCAGCTCGGCAGGTAAAACAGCCAGTGCTCCAAGACTGAAATATCAAAGGCCGTGGCTCCACAAGTCCACGGAAGGCCTCAACAAGCAGTCAGGGCAGTTCCGGTCGACCTATGAAGTCACGACCCCCTCACAAGTGACAAGACACCGCCACGAATACATTCCTTTCTTCCTCTGTTAGCTTGTTAGTGCTAATGACAATCTGTTTTATAAGTGACTGAGCATTGCATCAACGTGGCGCATGAATGAACTTGTAGATTTTTATCTTCTCTATTTTATTTTTAAATGCTACTAATGGAGTATGTTAGGTGACTCACTACCCCCATTATTATATCTGGAACAGTTCCTTGTAGTAGTAACAAATACATGAATTGAAACCCTAGTGGTAAATACAAAAGTATTCCTATTTAATGAATACATACATTTATAGCATAGTACTGTAGGTAATAAATAGTTCCTTGTAGTAGCAAATACATGAATTGAAACTCTAGTAGTACATACAAACATATTTCTATTTAATATTTACATACATTTATAGCACAGTGCTGTAAGTAATAATAGATAAAATACATATTAAGTCATCAAATTAATTAATTTGTATCCATGTAATATATACATTAATACATACATTAATAC

Transcript

ctg578-1.8-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21050	ARMC9_ARM	LisH domain-containing protein ARMC9, ARM repeats	Repeat	Interproscan
PF21051	ARMC9_LisH	ARMC9, LIS1 homology motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040369	Family	LisH domain-containing protein ARMC9	Interproscan
IPR048957	Conserved_site	ARMC9, LIS1 homology motif	Interproscan
IPR048959	Domain	LisH domain-containing protein ARMC9, ARM repeat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14881	LISH DOMAIN-CONTAINING PROTEIN ARMC9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005814	Cellular Component	centriole	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0097542	Cellular Component	ciliary tip	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg578-1.8-1 global RNA-seq network