Gene detail

Detailed information of ctg566-3.28-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg566-3.28-1	TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN	chr7	42319876	42337869	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg566-3.28-1

CAGATTAATGTGCAAAACATTATTTCCTCCTTTAAACAGTTGGGAAAAACAACAAAAAAACCCAAATCGAACATAAGTTGAGCTCAAGTTACACAAGATAATATTCTTGATTTGACTTAAAATGAGTGATTCTGATGAGGATAATGATGCCAATCTGCCATCACGTGATGAATGTGAAAAAAGATGTCAGAAATTTGCCACGGTCACGGGAACGGACACGGCCCTGGCCATGTTCTACCTACAGGACAGAGACTGGGATCTTGAGAGAGCACTCAATGCTTTCTTTGGCGGTTCTTCCCAGGACTCGACCGATGCATCCAGTAAACCTGTGGAAGAAGAAACGCCATCGCAGTCCGATGTTGTCAGTGATTCTGAACCGCATCGGTTTCGACTGTTGTCGTGGAACATTGATGGTTTAGACGACAGCAATCTCAAGTCGAGGACAAAGGGAGTGTGTGACATCATTAATCGTGACAATCCGCACATGGTTTTCCTTCAAGAGGTGATTCCCAAGTCTTTGAAGCTGATCGAGAAGCTGTGTCCGCAGTACCAAGCGATCCCGGGCGGTCGGGACGACTACTTCACGGCCGTTCTCCTCAAGTCAGGCTCCGTCGAGTTCGAGAGCTCCAACATAGTCCAGTTCTTCAGCAGTTTAATGGAGAGGAACTTACTTGGTGTCAAGTGCAAGATTAAAGGCGTGCCATTCCTGGTTATGACCTCCCACTTGGAGAGTTGCAAGGAGCACAGCAGAGAACGGATAAACCAGCTGAAGAAAGCATTCAGTCTGATGGCCAAAGCGGGAGATGATCGCAGTGTTATATTTGGCGGCGACCTCAATCTGAGAGATCCTGAGCTCGACAAAGCTGGTGGTTTGCCTGAAGGTGTCCTTGACCTGTGGGAAATAACCGGCAAACGTCCAGAGGCGAAATTCACATGGGATCTGCAACGGAATGACAACCTGGAGTGGAACATGAAGTTCCGGCCCCGCTGTCGATTCGACCGACTCTATTTACGACACAGCAAACTGAAACCAGCGATAAAACCGGTCTACTTTGAACTCGTAGGAATAGAGCGATTAACATCATGTCAGCGATTTCCCAGCGATCACTGGGGCATATTGACCCATTTTGACATTCTTGACAGAGTCGACAAATGATGCTGTGTTGGTGATTTTCCACCGATTACTGAAGCATACCGACTCATTTTGAATTTCTTGGTGATCACTGAAGCATACTGACCTATTTTCAAATGTTAGGTAATTGACAGATGACGTGTTGGCGATTTCCCACTGATCCCTGAATCATACGGACCCATTTTCAAATTTTCGGCAATTGACAAATGATCTTGTGTTGATGATTTCCTAGCAACCACTGATGTATACTTTCCCATTTTAACATTGTAGTCTTGTCAACAAATGAAGTTGTGCCAGCAAGTAACCAATGTTCTGTGGGGCATATTGTCCCATTTTGACATTACAGACAGTGAAATGATGTGAAATTAGCTGTACTAGTTATGTGACGTCTACAAACCCACCACACTGCCATAGACTAATTCCTGTGTTTGTTAAACCGTACGTCAGGGGCATTCACCCAGTTTTCCATATCCAGGTTTTAAACAGTCTTTTGGGCGTCATAAGCCAGTTTAAAAATTGGGTGCCATTTGTAAATCTTATCTTTTTCATATTGAAATCGTGTCACATTTCAATTGCAGTTTCAGTTGTTTACTTATATTTCACAGGGTCATTGAAGCCATTCCCAGATAACAGTGAATAAATAATTTTCCGTAAGCTCCATTTTTGTCCACCAGTTTTCAAAAGATTTAGCATAAGCTTTCTGAGAGTTGCTAAAGCAATACATGTCCCCTGCTTTCTTTCTTTTCTTTCTTTTTACTTATGTTTGTGCTTATATCCAATTGAGGTTCAAGCACACTCTTCTGGGAACACGTATCCGTTGTCTGTCCAGGACAGTGGGTTAGTTGGTTAGTGCTTAGTGAGAAAGAAGAGGGTTTAGTGGTCTCACACTGACCCATTGAGTCGTTAAAACTCGCTTGGGGTGGGAGCTGGTACCGGGTTGCGAACCCTATACCAGCTTTATGTCCAATGGAATAACCATGACACCACTGAGGCCGGTGTTCCCTGCTGAAAGTCAAACTTGATCTAGGCATAACTGGGTACATTGCCATGAAAGTATTAACTTCATCTGTACCTGTATGTGATAAAGCTATTTATCATCCATTAAAGTATTAACTTCATCTGTACCTGTATGTGATAAAGCTATTTATCATCCATTAAAGTATTAACTTCATCTGTACCTGTATGTGATAAAGCTATTTATCATCCATTAAAGTATTAACTTCATCTGTACCTGTATGTGATAAAGCTATTTATCATCCATTAAAGGCTTTTGTGGGAGATATCGCTAGCACTATAATTTGCGATATTCTCCTAGGAGATAAATGATTCTTTTTTACGTCACTATATGTTTCAGCACTAAACCTATCATTAGTGACATCATGCCACTGTTGTTCTGCTAGTTAACCAGTCTATCACTGCCAAATATAGTGACATTCAACCCACTTTACTGACATTGTTTACAATTGTCGCAAATGAAAATGGATGATAAAAAGAATGCCCCCCTCGTGTCTTGTGATATAATTTATCAACACTCGTTGATAAAAGTATAAAAATCCTCTGCAAGCCTCAGATTTCATACTTTTATCAACTCGTGCTAATAAATTGTATCACAAGACACTGGGAGTATCCTCTAAATTAAAAATTTCAACTCGATATCTTGGGAGAAAAAAAAAAAAGTCCAGAAAACTATACTATGGTCGATGACAGTCACTTTTCGGACCCATGTTTTGGCTTCATACACAATAAATAAAACATATACAATGGTAATTTTTTGATATGATATATTTGACAAAATTTCTTTTCATCTTTTAAAACTTAATATTTTGTCCAGAATTATGAAAAATAAAAACACACCGACATGTAAAAAGCGTTGTCTGGTGGTTATAGAATTTTAACAGGGGTCAAGGTTAGTAGACCAGTTTTTATTTTAGTGTGGCGAAGCATTGTAATAATACAGCTAATTTTGAATTTGAATGACATCAGTATTCCAATGGCGTCACTTTACATCTCCTTACAATAACAACTGATTACATGATGTTTCCGTTTTCAGAATGCTGGAAAAATTCCAATACAAAATTGCTATTGAATTTTTTTTAGTTTGAACGTTATTAATGCACCTGGATATGTTTGAAGAAAATCTTGTAATTAAAAAATTATACCTTTTACGAAAAATGGATTTTCAAGTGAAATTACGGTGAGATATGCTATATTTATTATGAACGAAGCCAAAACAAGGGTGAGAAAGGAAATGGTTTATTTAACGACACGCTCAACACATTTTATTTACAGACATATGGTTAAGGACCACACAGATATTGAGGGAGGAAACCCGCTGTCGCCACTTCATGGGCTACTCTTTGATTAGCAACAAGGGATCTTTTATATGCACCATCCCACAGACAGGATAGTACATACCACAGCCTTTGAGGTACCAATCGTGGTGCACTGGCTGGAGCGAGAAATAGCCCAATGGGCCCACTGATGGGGATCGATCCTAAACCGACCGGGCATCAAGCAAGCACTTTACCACTGGGTTATGTCCCGCCCCTAAAAGTGACTGCCATTGACATGGGAAGTCAGTAGAGCAATTAGCCTGAGGTGCTTGCGGCGTAAATTGAAATTGAAAACACCTCAGTGGATTCTCTGATATATATTTCCCCCCATTACAACCAGTGCACCATGACTGGTATACCAAAGGTTGTGGTATTTGCTGTCCTGTCTGTGAGAAAGTGCGTGTATACAATCCCTTGTTGTTAATGGAGAAATGTAGATGGTTTCATCGCAGACTACAAGCCATTAATTACATTTGAAAATCCAATAGCCGATGATTAATAAATCAGTGTGCTCTAGTGGTGTCATTAAACCCAAAAGAAACTTTTAACTTTGTTGGCTGCAACCCCTACAATTAAGCAAATGTCCACAGCCAAAAAAAACCATACCATTGAAAAAACCCACCCTAAATATAGTGCAAGGCAAAAACGTGTCTTGGAGAATTAACAACTCCACACCATTGCAGGGGTTGAGGCTGGGTTGGACAATCTCAGTGGTAGAACGTCGTCAGTGAACAGGTGCAGATCCAGCAGTTTTTGCAAGGGGGGGGGGGGGTGTGTGTGTCTACAAGCAAGTATTTATATGGAAGTTATATATTAGAGGTGAATGCATTTTAAAATAAGTGGACAAAATATTTGTTCATCGTGTGTAGGGGGGGTCCAGACCCCCCCAACCCCCTGGATCTGCCCCTGATGAAGGCAGATTTTCCCCCCTCTGTCATTAGCTGTGGTACATACATGTACTTTGCTGTCTAAATACATATAAAATATCCCTTGATGGTTTTTGTAGGAGTATCCTATGAGCCGATAGCTGGTTTTCTCCCTCTTCTTCTCCTAACCCAAGTGTCAAAATAACCATATTATGTTGGACATCAAATAGCCCAAGTTTAAAATGGGCTGAGGTGTCGTTAAACAAACATTCCTTTCCTTTCCAAACCATAATTATTACCCATATGGTTAAAAATATCTTGGTAAATATCAAAGTTATACGTCCCAGTAGAATTATAAGTGGGACGAAACACTTGGATGTCATCAACTGGCGCACTACCTTACAGGAACGTTATGAATGAGTGATATAAAATTGAGATCGATTATGGGTAATAAATTATTAGGATATTAAACTCGCTACCATTTCATATCATGTTTATGTCCCTCATGAAATGAGAAACAGAAGCTTGTTTAATATCCTATAAGTCAGACACCAAATAGGCGTACTTTTATATTGCTGAGGTGTTGTATAACAAACATTTTTCAACTTTCATTGTTGGCTGGCCAGTTATTTTTATATACTGTTTTTATGGGTAGAAAACTTTGCTGAGTGTCTGTGTGGTATTACATGTAGTGTTCGTTTGCTTGCTGTATATCCAATCAAGCCAAAATAAAATTGTTTTACTTGTTTTCCCGGTTTGTTATTAATAATTTAGTATCATGTATATCAACACATTTGGACAGTATGTAA

Transcript

ctg566-3.28-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR051547	Family	Tyrosyl-DNA phosphodiesterase 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15822	TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0016605	Cellular Component	PML body	Interproscan
GO:0070260	Molecular Function	5'-tyrosyl-DNA phosphodiesterase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg566-3.28-1 global RNA-seq network