Gene detail

Detailed information of ctg563-7.0-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg563-7.0-1	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	chr5	16150146	16159266	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg563-7.0-1

ATGAGGTGTCACAGCAAGACAGGGCTGACTGCACATGTTGCCTTCATCATGGACTTTCTCAAGCAGCTGGGTTGGATTATCAACATCGAGAAATCTCGACTGGCTCCCACACAGTCTCTACAGTTCATAGGCGCTTGGCTTCGACCCGACCTGGGCCTCGTTCAAGTTCCCTTAGACCGTTGGGAGAAGATCCAGACCATGATTGTCATAGCCCTCACCGCTCCAATGACCTTCCGCGGTTGGCAGAGTCTCCTGGGTCTCCTCACTTCTGCCCAGGATTTGACACTCAGAGGTCGTCTCCAGTTGCGGCGCTTGCAGATGTTTCTCAACCCGTTTGTTCGGCGGAACTCACTCCAGCAGTCTGCTGCAGTTGACTTATCGTCTCTACAAGCTGGTCGACGAAATTCCGTTGCAACTTCGGGCTCGTCATATTCCAGGGGTTTGCAATGTACTAGCCGACACTTTGTCCCGGCCGTCGTCTCCACAGCCGACGGAGTGGATGCTCCATCCGGAAGCGTTTCGATGGGTGTGCGACAGACTTTGGACACCAAACATCGATCTTTTCGCCACACGATTCAACCATCAGCTGAGGGTTTACGTGTCTCCGGTGCCGGATCCCGAAGCTCTGGATCTCGACGCATTGGCCATCAGCTGGGAACAGATGGACGCGTACGCTTTTCCTCCACCAATCCTCCTTCCAAGGGTGCTTCAGAGGTTTCAGCTGTACCATTGTCGCCTGTTGCTCATTGCTCCGATGTGGCCATCCAGGATGTGGTATCCAGATCTAATACGTCTTGCCGATCCACATCCTTTACCGCTGCCAGACTGGGATCATCTGTTGCTGCATCCCACGTCAAGACTGTACCATCCACGTCCGCAGTTGTTCCAACTGCACGCGTGGACTTTATCTCCAAGAGTTTGAGGAAGAAAGGTTTTTCTTCACAGTCTACGGCGGCCATTTTGAAAGCGCACAGATCATCTACTACTGCGGCTTACAACGTCAGATGGCTTTGCTTTCACCGATGGTGTGTTAGAAAAAAGATCAAACCTCAGACGATACAGATACCTCGTCTTGCTGATTTTTTGCTATATCTGCGGACCACTTTACGATTGAAGGGGTCTACCATCGCTGGGTACGTTTCGGTCATCGCTACTGTTCGTGATGTAACTACTGGAACGAAGTTATCGGGTATTCCTGAGATCCATAAAATGATCAAAGGTTTTCGCCTTGAAGATCAAGTACACCGGTTTCGGCCACCAAGATGGGACCTGAATTTGGTGTTACGAGCGTTATCGACTGCACCTTATGAGCCGATCGAGTCCTCTTCCCTGCAAGATTTGACACGGAAGACGGTGTTTTTACTCGGTTTCGCCACAGCTGCTCGTGTCTCAGAACTTCATGCTCTTGATGTCGATTTGGTACGTTTTCACCGAGATCGGCGTGCAGTCAACTTGGGGTTACTCATGAACTTTATTGCAAAGAATCAGTTACCAGACCAAGCGCCTCGCTCGTATGTTGTGCAGGCCCTCTCCTCTATCGTTGGTCCGGCGGACGTTGAGGACTTGGCGTTGTGCCCTGTTAGAGCCTTGCACCAGTACATCGAGAGGACCAGATCTTTTCGACAACATCGTAAAAGACTTTTCCTTTCCTGTAACCAGAGTCGGTTGAGGGATATTACCAAGAACACGGTGGCCACCTGGATCCGGTCTTCTATCCTGACCGCGTATCAGAAGGAGGGTTTACCTGCTCCGTCTGCTTCCAATCCGCATGAACTTCGTGCCTTGGCTGCCACGATGTCCCTGCATTGCAACACATCCATTCAGCACATCATCACTGGCTGTTTCTGGGCGACGGACTCCATCTTTGCCAACTATTATCTGAGGGATATCTCCACAGAAGACGTTGAGGGGTTCCATCATCTGGGTCCGGTTGTTGCTGCACAGACTCTGTTGAATACAAGCCATCCTCGTGATGATTGGCAGGCCGCTCGAAATGATGAAAAATCCAAAATGCACATTCTGTACCCCATCTCCATTCTGCTGAACCTTCACAAGTGTATGATCGCCAGGGACCCCAGAATGGCTAAAATGAAGGTGTTTGGTGAGATGCCCCTGCTGAGTTTGGCGATCTCCGACTTCCGTCTGCAGGAGATTCTGTCCATGGTCGACAGTATTCCGCTCCCGGAGTCTGGCCCCCCTGAACCTGAGAGCGAGGACCTCTTCAAGGGACCGAGTGCCATGGTGTTGGTTGCAGGTGATGAACAACAGATGTTGGCGAAGGCCTCCAAACTAATCACAGCAGAGGAGGCCACTGCTGTACCCAAGAAACTTGAACGGGCAATGTCGTCAGAATATGTCAACTTCACTGACATGGAACTCCGATTTGAAATCAAGAAGGTGGTACTGAATGTGAGTGAAAAGACTGGCGGGGAGGATGTTCCGTTGTTGCGGCTGGTGGTGGAGCGAATCGGAGCCGCGATGGACATGAGGACATTCGACATGAAGGTGGAGGCTCACATCAGTTCACTCAAGCTCGAACATCTCCGCTTCAAGGGTAGATATAGTCTTCTTCTTCTCAGGGCTGATCCAAAACTGATCACGGGGGAGGTGTTGGACAGGAGGCAGTTGTCTTTATAA

Transcript

ctg563-7.0-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16910	VPS13_mid_rpt	VPS13, central RBG modules	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR031642	Domain	VPS13, middle RBG modules	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg563-7.0-1 global RNA-seq network