Gene detail

Detailed information of ctg545-7.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg545-7.4-1	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT	chr12	38338432	38351295	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg545-7.4-1

GTCTTTTATATTGTTCTGTGAAGTTTATGCACTGTATACTAGTTTTTGAAACCATTCTGACTTTTTGATAAGTAAACTGGAAGGGTTACTTACACTTAATTAATTCCCATTTTTAAATTTTATATTATAATATGCAAATATTCAGGCAATGCACATATAGTAAGAGTGACACCTAACATTTAATTTACTTCCAATAAAATGAGATGACACAGTGTTTTAACTTGTTCTACCGTTCAAGTTAGGGTCAGATGACGCAAATATCCGGAAGTTCAATGTTTGGTACAAGGCAACCAAAATGGCATTGCTCATAAGGTCACTAGGCTGTAAGAACTTGCTGAGGCAGCAGGCACTTTTTTTTAATAAAAAGTTGCCGATGACATCCTCAGCTTATGATGAAATGAGCAATTTCTGGAAGAAGAACAGAGAATTGGAGCGACCAATGTCTCCGTTTCTTTCCTCTTACAAGCCGCATTTAGCCATGATGACATCCTTAGCACATCGGATCTCTGGTGTAACAATGTCTTTAGCCATCTCTGGAGTTGCCATCACATTGATGTGCCTACCCAGTGACTTCTGCACGTACTTCGACATGATAAAAGATCTCAACGTGCCACCCTTGATTATTTACGCATTCAAATATGCATTGGCCGGACCAGTCACATACCATTACCTTAATGGATTTCGGCATCTGGCCTGGGATGGTGGCGTGGGGTTCGGACTGAAGGAACTCTACAAGTCGGCGTACTTCGTCATGGCGCTCACGTTTGCCGTAGCCTCTGGTTTCGTCTTCTTGATGTAAAAACAGTCGTGAAAATTGTGACGCTTCGTGAACTAGTGCTGTTAATATTGCTGAATGCCATTTCGGACTACAATTGATAGAATTTCAATAAAACAATCGTCTGTTGATAACAAATGTATTCAGTTGTGCTTACAAAGTTTCAATTCTTATGATTAACACTGAATTCAGACTTCCAACTTGTCATTGCTGAGTAAATGATGTATTTTTTCAGATTTTTATCCAATTTCACATTTTTTATTGTTATCTGGGGAGGTTTTGGGTGGTGGAGTGATTGGGACAGCATCAAATAGTTAAAAGTTCCATTTTCATTTACAACTGGGTATCAATACTATCATATTGGTATGATTTGTGGAATTGGTCAAGGACTTCCTAGAGCATTTGGTGCATGGCTTTTTATGGTTCAGACTTTTAAACATACTGTATCTATAAAAGTTTGACCGTTGAGAAAAATACATACAGGTGGCTATAGCCACCAGGAACAATGTGTATAATTGTAAAGGATAAGAATTTGGGAAAAAAATGTGGCAACGGTTGCGCTGCTTGTACCTGTAGTTAGGGTATCGTAACAGAAACCAACGACTTGGTCTCGGTTACTGATGACCATGTCGATGTCAGCACTATGTTATCATATATACAGCACCTGTAGTTATGGAAACAGGAACCATGGATTTAAGTCTTGGTTACTGAAAAGCATGTCAAAATCAGCACCATGTTATCGTATTTCAGGTCTCGAAACGGCCTGTGGCCAAGTCGCCAAGTGCGACCAATGTCCCATTTGGGCGACTTGAATATTAAAAAAATAATGGCATTAGTCGTCCAAATAATGCTATTATTTGAGCGATCTACTTTAGATCTATAACATATAAGCCACTATTAATATTTGTATTGCATCTATTTATTCCACATTAAAATCTTTCTCGTGGTTTGTGGTTAGCTTACCATAATTTGCCAACCTCCATTATTTTTGGGACCACCATATTTTTTGGCAACTTTCTGCCCTGGTATCTACAGTAAGTGTTGCTGCAGAAAATTGACCTTTGCTACCGTGAAACAAACTGTCCGTTATAGTTCAAAACACTTGAATTTTGTACAATTCTCTTCTTCGATTCAGTGTGTTTCATTACATAAGATAAATGGAAGTGTAACCGATTAATAGGTTACGTGAAATCTCCAGCTGTATTTGATGCCATTTTGTATGTACCAATATCTTGTAAAAATTAAAAAGACAACATATATATACGTTCAAATCTCGCCAAGATGTACATGGCTTGTAATAAAACATAAATGATCACA

Transcript

ctg545-7.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01127	Sdh_cyt	Succinate dehydrogenase/Fumarate reductase transmembrane subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000701	Family	Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit	Interproscan
IPR014314	Family	Succinate dehydrogenase, cytochrome b556 subunit	Interproscan
IPR018495	Conserved_site	Succinate dehydrogenase, cytochrome b subunit, conserved site	Interproscan
IPR034804	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10978	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005749	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006121	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045281	Cellular Component	obsolete succinate dehydrogenase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg545-7.4-1 global RNA-seq network