Gene detail

Detailed information of ctg48-15.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg48-15.4-1	UBIQUITIN-PROTEIN LIGASE E3C	chr3	55009569	55057688	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg48-15.4-1

AATGGAAAAGATTATAATGCTGTCATCGTTGTCAAAACCAAATGTTTACCATGTCGTTTGTCATGTCCTTGAACAGTGGAACGTATCGTTTGGTGATTGCATGTGTATTTGATTAAAATTCCCATTTCTTTCTTTACTAATTATAGTTTAAATATGTTCGCCAAAGTAGACACCCAGAAAAATCAGTTTTTAGACAAGGCAAAAGCTGCCCGGGCAGAAAGGGCCCAGGAAACTATCAGAGCACAAGCAGCCATAAAAATACAGGCTGTTGTAAGAAGTTACCTTTGCAGACAAAAATATCGCCGAGAATTAAGACAAGAAGTTGACACATTTTTACAGATTCCTGAAAACAAAGAGACAGAATACAAACCAGACTTGATTCCAGGTGTTGAAGCATTCCAGAAAGTGAAAATATGTTTGTACCTCATGAAAGATTCACAATATGAACAGAAGTTTGAATATCTCTGTAGATATTTACTTGCATCAATGGACACTGATGTTACAAAAATGTCTTATGTTTGTGTGGCCTTAGTAAAGGAGCACACATTGTCATGGATACAACAGTTAAAAGATGTCCTGTGGAAGTGTTGCCTGTGGTTGAAACAGCTCAAGCCTGAAACATACAGTGAAATGAAAACTATCAGCATGTACTTGCGTGTTTTGATAACCTTCACAAGTCCATCTTCCTGGAAGATTCTTAAAGGAAAAGCAGGTGCTTCCCTTACAGTTGGCATGACACAGCTCTGTAACAACATCATGGGATATCTCAACAGCAAGGGCATTTACAAAGTTTTGCAATGCCTGCTAACAAAGGGTCTTGCAAGATCAAAGCCTGTATTTAGTCGGGCACCTCTGTCAGCTATTGTAACAATTGCTTTGAGACCACTAATTGCAGCTAATTTTTCCGATAACTTGTTAACTGTGTTTCTTCTACACATCCTCTCTGTTCCGGCCATCATTCATCATGTAGCTTCCACGGCTCAAGAGTGCCTGTCCACTCTGATCACCCACCGAATCTTTAAACGATGTCTTGATCTCATGACCAATGAACAGAGCACAAGAATAATCTTTAACTCTCTGGAAGGGAACTATGCTCTTTGTCTTATGGCTAATTTAATACAGCTTGGATTTTTCGAGCTTGAAGGTCTAGTTGAGAACACACAAGACTTTATGTTTGTGATGATTCGCCTTCTCGACAGCTGTAAGTTGTATGTACAAAACAAAAAGTCGAGTCTAACCCACTGGCACCCAGTGTTGGGATGGTTCTCACAGAAAACGGATCAGAGTCTCCACGAAGCCATGCCATTTGTTGTGAAACAGCTTCAGTTACTGTGGGGAGAGAAGATGATTCGCATCTTGTTTTCTGCCCTCCTGGAATATGTGGAAACCAACCAGCAGAAGGAACCTGGCTCACCCAAACAAAGTATTTTTAGAAAGGCCTTTGAGAAGAAGTCCACCAACCCAAAGATAAAACTGGAGAGTTGCATTTCCACATCGACGTGTTTACCATGTGCCTTGTACAGGATGTCTCTGCAAACCCTGTCTCAACTTAGGATGGATATTTTGGGAGGACTTAGCTACAATGATATTCTGTTGCCAATCCTGTGGAGATTTCTCACAGACATGGGACCAAACTGTGGCCTTAAGACTTTCATGGACCTGCTCGGTCAGACACCCAACTCGACCATCCACCCCGTGTTCAGTTTGTTAACACTGTTCTGTGAGACTGCTAGTCACCTTATTACGACACTAGATGACATGGAGATGTATGAACAGCAGCAAGTGTTTAAGATGTCGGATTACATCAAGATGAGCGACTTTCTCAACCTATTTGTCTTCCGGCTTATTTGGAATGGCTTGATGGATGTGCAGACAGCTGGCACAAGTGATGTATTCAGCTCGGCATGGACACTGTTAATGCTGTTACATGAGAGAGATTCACGGAGGCAGTTCACACCCAAACACCACTGGCTTATACGAGATGTGAAAGCCAGCCAGTTTGTTGGGGAACTAGAGAAGGGTAGAAAGACGACGACGTTCCTCATGCAGCATGTTCCTCACATCATTCCCTTCCATGAGCGAGTTGTTCTGTTCAGGAAGTACGTTGCGAAGGAGCGTGATGCTTTAGGTCTCACAGAGGCTGCATGTACATCTCCACAGTCTACCCTCATCTCCATTCACAGAAGCAGAATTGTTGAGGATGGCTACAGACAGCTGGCCCAGCTTCCACCGCGAGCAATGAAGGGGGTCATCCGAGTGAAGTTCATCAATGAACAGAGAAAATGTGGAAAACACCAACTGTAATTGTAGGTGTTTGTATTTGCTATCTGAGTAATCTGTAACTGATACAGGGCCTGGATGAAGCTGGAATAGACCAGGATGGAGTGTTCAAGGAATTCTTGGAGGAAACCATAGCTCGAGTCTTTGATCCCGCACTCAGCTTGTTCAAGATAACCAGTGAACAGAAACTCTACCCATCCTCTACCTCATACATACAGGAAAACCATCTTGCACTATTTGAGTTTGTTGGCAAAGTCCTTGCCAAGGCTTTATATGAGTGTATTGTTGTCGACATTCCTTTTGCGCCATTCTTCCTGACCCAGATACTTGGTCACCAGCAGAGTTCCACATACAGTTCCTTGGATGAACTTCCATCTCTGGACCCAGAACTGGCCAAAAGTCTCACTTACATCAAGCATTATGAAGGAGACATCAGTGAACTGGATTTGACATTTTCCTGTGATGAAGACTGTATGGGCAAACTGGAGACACACGAACTTGTTCCAGGAGGCAAGGCGTTTGCTGTGACAAATGAAAATGCAATTCGCTATGTTCACTTGATGGCACACTTCCGCATGTACCGACAGATAAGGGACCAGACTCAGGCATTCATCCGAGGCTTCAAGTCTGTCATTAATCCAGACTGGCTGCAGATGTTTTCCGCTCCAGAGTTCCAAAAACTGATATCTGGTGACAACACCGATCTTGACATTGAAGACTTGAGGCGACACACTCAGTATTATGGTGGCTATCACAACAACCATAAAGTAATAAACTGGCTATGGGTCATTCTGGAGAAAGATTTCACTTTGATGGAAAGAAGTCTGTTTTTGAAGTTTGTGACAAGCTGTTCCAAGCCACCTCTTCTTGGATTTTCCAGTATGGAACCTCCATTTTCTATCCGCTGTGTTGAAGTTAGTGACGATCAAGACACTGGGGATACAGTGGGCAGTGTATTGAAGGGCTTTTTCAACATCAAGAAAAAAGACGCGGGTGGAAGGCTGCCCACGTCTTCAACTTGTTTCAACCTACTCAAGCTGCCAAATTACTCGAAGAAAAGTATTCTCCGAGACAAACTCAGATACGCGATTCATTCTCATTCTGGATTTGAAATATCTTAACTCTTCTGTGGTCGTGTTATCCCTATCAGTCTAAAACTGTTAACAATATTTACTGTCACCGGTTGAACCAGAACTGAACCATTTTCACCAGCTCAGGTGGATGAACGTTCAAAACCCCAAACCAGTGATTTTATTACAGTATTCAAAAGCCTGGATGAAAATTTGACGAAAATGTTTTTTTTTCATGGCAACTATAAGCGATTTCAGACAGGAACAATGTCAAATAATTTTGTATTGTTAAAGTGCATCAAATACACTTAGTTACCCAGCCCATCTTTGCTGCAGTTTTGTTAGTACCATAACTATTAGGGTATATTTTGATGTCTTGTTAGTACTCTAACAAGAACTGTTATTATTGTTTTAACTTCAAAAATCTATTTTATCTTCAGTGTGACAGTTTTAAGATACTCAGAAATGACCTTCTATTGGTCTAGACATTTTAACCTTCCTCGCACAGCTGAACTAGTGATGTGACCAACATGACAATTCAATCCCTCCATCTGACATGCCAAAGGACTGAACCAGTGTTCAGTTATATTTCTACAAACATTTGTTCCTAGCTCTCGTAGATGTTGGTATCTAGTCTTCTTCAGTATTAGTTGGTTATACCTGTTTTAGATAGTCGGATCAAAACAGAATCTAAAATGGTGTATATGTTATAAATCAATATTCATGCCAAAATATGTTAGTTTAACGTTTAAAATGAGAAGCTATTAGTGCTACTACTTTTAAGAAAGAAGAATGAATACATTGGTTTACAATGGTAATTAAGTGCAATAATGTATATAAACCATCAAGTTATTTATAAAATGTTACAAGGCAAGTGGTACAAATAGTATAAGGTGTAAAAAAAACAAACATTGTACGTTTCTAAGAATCCGGCCCTATAATAGATTTTGTTTTTAATATATCGGTAAAAAAAAAGAGTGAAAATATAGTTTTAAAAAAAAGCCTACTAAAATGTTTTGGGGGCATTTCCTTAGAAACTAGCAATGTTTTTTTGTTAGGCCCAAGAAAAGTGTTTCACATGCCTAGATTATTCATGACAAAACATCTTGGTAGGAGCAGGACTGCTAAAAGTGACATGTTATTTTGTATATATTAGAAGTTGCTAGCAATTTCAGAACTGTGATGTATCGCACATTGAAATTTTTACCAAATAAACATCCCCAAAATACA

Transcript

ctg48-15.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR044611	Family	Ubiquitin-protein ligase E3A/B/C-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45700	UBIQUITIN-PROTEIN LIGASE E3C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg48-15.4-1 global RNA-seq network