Gene detail

Detailed information of ctg474-1.18-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg474-1.18-1	CYSTEINE DESULFURYLASE FAMILY MEMBER	chr14	21147568	21174139	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg474-1.18-1

ATGTGGGAAGATTACTTGAAAGACATTTATTATGATCCATCCAACCCGGCCAGTTTTTCTGGTCCAGACAAACTGTATAGATACGTCAGAAAAGCCGGGAAATACGTCATTAGCAAGAACAATATCAGAAAGTGGTTGCAAAAACAGGAGTCATACAGTTTACATCATCCAGTCAAAAGAACGTTTTCCAGGAACAGAATCGTGGTCACAGGAATTGATGATCAGTCGTCGGCCGATCTCATGGACATGGTAAAGTTTGCACACTATAATCGTGGTTACACCTTTGTGTTGGTGGTAATCGATGTTTTCTCCAAATATCTGTGGTTGAGGCCCTTGAAAGACAAAAAAGGACTGACAGTGGCAAAAGCCTTAGAAGATGTATTCCAAGAAGGTAGACAACCCAATCGAATTCGCACAGATAGGGGTATGGAGTTTAGAGCAAAAGACATTCAAAGACTTCTTAAACAACAAAACATTCGGCATCTGCTCACCAACAACGAAACCAAGGCTGCAGTGGCAGAAAGAGTCTTAAAAACGATCAAGACCCGATTGTACAGATACTTCACATACAAACAGGACTACGAGTACGTCGATCATCTGCAGACATTTGCCAACAGCTATAATTCCACCTATCACAGAACCATTGAACGCGTCTCCAAGATGATTCCACGTCTTTGCAAACATACACAGTTTCGAATGCTCACAGATGGAACGAGATTTCTTGTCAGGTGTCTTCAAACTAGCGTGACACATTCCCAGAATGTTACCGAAAATACAGCAGATGGCAGTCAGGCACAGGAAATGCGGAAAGATCTGCCTCCTCCCAATGCGAGACCTCTCTATCTTGATGCTCAGGCCACAACACCACTGGATCCAAGAGTTCTGGATGCTATGCTTCCATATTTGGTCAGCTTCTATGGCAACCCACACTCTCGGACACACGCTTATGGATGGGAGAGTGAAGCCGCTATGGAGAAAGCGAGGAAGGAAGTGGCAGACCTAATACATGCGGATCCACGGGAAATAGTTTTCACAAGCGGAGCTACCGAGTCGAACAACATTGCCGTGAAAGGTGTGGCTCGCTTCTACAAGAGCAAGAAAAATCACATCATCACAACACAGACGGAACACAAATGCGTGCTAGATTCATGCCGAGCTTTGGAAGCAGAGGGATTTGAGGTCACCTATTTGCCAGTACAACCAAATGGAATTGTGGACATGCAGACACTTGAAGAAAGTATTCGACCGGATACCGCTCTTTTGTCTGTGATGACCGTGAATAATGAGATTGGGGTGAAGCAGCCAATTGCTGAAATGGGCAAGCTCTGTCGATCAAAGAAGGTGTTTTTCCACACTGATGCAGCTCAAGCGGTTGGGAAAATCCCGCTGGATGTGAATGCTATGAACATCGATCTCATGTCCATCAGCGGACACAAGGTGTATGGTCCCAAAGGTGTGGGGGCGCTGTATGTGCGAAGAAGACCAAGAGTCAGGGTGGAAGCACCACAAAGCGGAGGGGGCCAGGAACGGGGGATGCGCAGTGGCACTGTGCCCACTCCTCTTGTTGTTGGCATGGGAGCGGCCTGCAGAATAGCATCAGAAGAACTAGAGTATGATGGTGAAAGAATAAGGAAACTCTCTGAGAGACTCATTAGTAAGATAACAGCAGCTTGTCCACAGGTTATCCAAAACGGAGATCCGGAAAATACTTATGCAGGCTGTGTAAATCTTTCATTCGCATATGTGGAGGGCGAGAGTTTGCTGATGGCACTCAAGGATGTTGCTTTATCTTCTGGAAGTGCCTGTACATCAGCATCGTTGGAGCCATCCTATGTGCTGAGAGCGATCGGAGCTGACGAGGATCTTGCCCATTCATCTATCAGTCCACTGTGGGAGATGTACCAGGATGGAGTTGATATCAAGTCAATCAAGTGGTCACAGCACTAACTAGAGAATCCACAGAATAACAACTACAATTGTCTTCCTTCCATCTCGACACATCCACTCAAACAGAACTTTCCGGGTGAATTTAGAGAAAAACACGAACAGTGCCACTCAAGCTTTTCTGCCCGACAGCATGCTAAATAGGAGAGGGTCTTGCAAGTTAGTAAACTTCGTGCCTGATCCTTTTCTTCTTTGTGCAATGAAATACGTTTTCATTCAATCAATTAAAAAATGCAAAAAACTAAGCTTCAAATGTTAATTTGCACCAAAAAATATTGGGAAAGAAAAATAAATGAAAGATTCAAGTTTTCGACACTTTTTTTTTAATTATTGAACCAGTTGAATATTATTTTTGTGTCGTCATTTGAAAAATAAAATAAAAAATGACCCAAACCCATTAGCTATAGATTTATCCAAGTACATTTGGGAGTAACAATTATACGGTGCACATTGCAATCTCAAAACTGCTGTTGGGGGAACTTTGAAAATCTTGTAAAACTTTGGTGGAAATTTGTGGGGTGGGGATATATGCATCTCAGAAATATTATAGTGGAGATTTGTTGGGTGCGGTTTCAAAATGTTACTAATACCTAAGAATACACCATTTCAAGCACACACAACAAAGTCCTAGCTTACAACACCAACCCTCTTTTGATCATATCCAGTATCTGCCATGGATATTTATGCAATTTATTGAGAAAAAACCCACTTTCTTTGAACAAAGGGTTTAGAAAAATAACACAATTCTTAGTTTTGTAAATATATTGGACACACGAGATTATATTACCGGGTACTATTATTATTTATATATTGTTATTAAAATGTGAACACGCACAAAAATAAACTGATATTCGAAAGACATGAACATTTTAGTAACCTGAATGTTGTAGAATTGTGGTATCCAGATAATGTGCAACATCCTCCAACACGTTTGACAGATAGGTCAATACTAGGCTTTAAGACTTAAACATGTTTTTATTGCACGTGTGACAATATTAGTTTATAGCACATTTTGTGTTGAATTATGAAACAGTTTTGTGTATGTGGACTGAGGTTGTTAAAAAAAGAAAGAGGCATACTTAATATCAAGATCTGATTGCTCCACTATGTGTTTT

Transcript

ctg474-1.18-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266	Aminotran_5	Aminotransferase class-V	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000192	Domain	Aminotransferase class V domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR020578	Binding_site	Aminotransferase class-V, pyridoxal-phosphate binding site	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11601	CYSTEINE DESULFURYLASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0031071	Molecular Function	cysteine desulfurase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg474-1.18-1 global RNA-seq network