Gene detail

Detailed information of ctg454-4.7-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg454-4.7-1	UNCHARACTERIZED	chr1	10074996	10086049	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg454-4.7-1

GAAAACCCGCCAGTTGAATTGTCTAACGACCGTAACTTAAATTAAAGACCATGGCTGTAGCAGCTGAAGACCCAAGAAGTTCTTTAGAAGATTGCACGTGCCCAATATGCATAAGTATCATGATTTTCCCCGTAACAATGCCGTGTACCCATGAACTGTGTATGCCATGTTTTAAGCATAATGTCGAAGAGTCGAGTTTGCTGTGTCCCCTTTGTCGACGAAGAATATCTACCTGGACGCGACTTGCGTCAAGAACAAATACCTTGGTTAATGAATCCAGGTGGAAACAGATTCGCGAATTGTTTCCAGAGAGAGTGCAGAGACGACTGGATGGCAAGGACGAAGACGCCAATGAAGAGACGTTTCATCACCCACCAGTTCACCTAGCCGCCCCCGGTGAAATAAGGAAGGAATATGAAGAGGAACTCCATAAGCTTCGACTACAGCGCCTGGCTGAGCGTCAGAAGGAGGCTGAGGAGAGTGCCAAGCTGATCGCTCGACTGGCACAGGAAGAAGACGACGTCACACTTCAACGCCAGCTCGAATTGGCGAGAACAGTGCAACTAGACGAAGCTGTGGCCCAGGAACTCAATGAGATAATCAATAACGAGAATGCGCCAAGCACATCTACAGAAACTCTGAGATTTACTGGAAGTTCGTCTAGTGCAAGCACATCAAGCAGTCTCAGCGATCGCAGCACCTTGGTGGCGTTCTTCAGTCCCAAGGTCATGAAGGCGAAGGATCCATACCCATACAGCTGTATTTCGCCAGCAGACAAAGAGAAGGAAGACAAATCTGACGGGCTTGGGTCTGTGGTGGACACCGCTTCAGGCAGAGGTTCTGCGAGTGCCAGGGAAGATTTCAGACTGTTTGACACGTCTGACCACACATACTGTCCACCGTCGCACTCAAACAAACCGAGCACAGTGGGACGGCCACCGAGTAGAGAGGGAGAGGGAGAAGGTTCCAGCACAGAGCAAATATCTTCCAGCACGAGTCAGAGACCTTTATGCAGAGAGCAAAGACCTCCAAGCAGAGAGCAGAGACCTTTAAGCAGAGAGCAGAGACCTCCAAGCAGAGAACAAAGACCTTCAAGCAGAGAACAAAGACCTTCAAGCAGGGAACAAAGACCTCCAAGCAGAGAGCAGAGACCTTTAAGCAGAGAGCAGAGACTTTCTAGTAGAGAACAAAGACCTCCAAGCAGAGAGCAGAGACCTCCCAACACAGGTCAGAAGTCTGCCAGCACAGTGAAGAGACCACCGAGCAAAGAGCGAAGCCCTCCCCACAAAGCTAAAGAACCTTTGAGCACAGATATCATTGCATTGTTGTCGCCGCCGCCGGTTGACAGAAGAGAGAAACGGGACGACGCTGAGAGGAGTGCCAGCACCACGAGCAGTAACGACAGCATCAACAACGAGCTGTCTCACTTCAAACCCATAACCGCTTGTCCCCGAACTCCGCCGCGGAAACTTGCAAATGGCGTTCTGGTCGATCCACCAGTCGTTCGAACGACTCCTCGGAACCTTTCGAGAAACGACTTCAGCCCATTGCACGAGCCGTCGTCATCGTCGTCGGGACTCGACCCAGGGAGCCCGTTCATGCAGCGCCGCTTACTGGAGCTGGCCGAGGAGCGGAAACAGATGGTGAAGGAACGGTCAAAGTCCACGTCCACGGCAGCTGCCATTCCAAGTCGGGTGGACGATATGGATCAGCATTTGGTGGGTTGCTTCTCTGCTGAAGATGTGGATGGACTGGAAAACCTGGTGCGTCGTCCTCTACATAAGCATTTAGACCAGAACAGCGATGCTAACCCTGCGACTAACCCTCCTGCCGTGGAATCGAAAACGAGTCTCTTGATTCCCATGGAGTCTATAATCGAAGACGACGATCTGATAGACGTCCCATCGCTGTTTCCTCGCTTGAAGCCTGAAGAAACAAAAAATCTCTGTAATGAAAAGGAAAATGTTATACAGCCATCTTCAAGTGGAGCGTCGTCGACTGAACGGTCAAAACTGCAAGGCAGTAAGTCGTCGAAAAATACAACAAATAAAAATAGAGAGCCCAAAAGCAGAAAGAAAACTTTGACTTCTCCTCAGAGATCCATCAAAGACTGGCTAATTAACAGTGAGAAACGTTCTGAGGGTGCATGTATATCCCCAGACTTATTCCCGAATGATTCAAATTCGTCTGCGAATTTTGAGCCCGTAAGTAAGGCAGATGACTCTCTGGTGTCAGAGTCTTCTAAGCTGGATTCCTACATAGACAGAAATGCAAATGAAAGGTTTAAGAGTAAGCATACGAGGTATATACAGCTGGATGAAGATTCTAATGACTCTGATTGTGAAGTCGTTTTTTCTATAAGGAAAGCAGACTTGCAGGTTGGCAAGAATGATTTGGTGAAAGACAGAGGCAGTCTTGCTGATCACGGTTATCACAAGGATATAACTAGTACAGTAGTTCCTGTTGTTCCTGTTACGAGTATTAGTATCCCTGATCAAGTCGGAACCGATAGTCGAGATATCAGTAAAAGTTGTTCTACCCTCTGTGGAGATATTTCAATGCCATCACATTCCAATAGTAAAAGTCTAGTAACAAGTAAAAAGGATTTGCAGAGTGGTAAGCTCTTTACTGAAGAAGTAAACAGTAGTGGTGGTAAGAACGCCGTTGCAGAGTGTGATAAAAATAAACATCTAAACACATCGGTGTCAAGCAGAGGACGACTGATAAAAAAGAAATCGTATCCGTCTGACGACGAGGATGATAGTTCCGAGGAATTCATTGCAAAGTCGCTGTTGCCAAAGAAAACCGTTCGCTGTAAAATGGGCCAAACCTTGAAGAAGAAGGTTAAATCGGGAGGGAATGAAAACACCGATACACTGACCCACGGCAAAGCCACACGTCACAGCAGCAGTTTGGACTTGGTGTCTCGTTCGACAGGACATGTACCTTGTGTATCATCCTCATCATCAACCACGACGAGGACCGGGAAGGTTCGATCCCATGCAAGCAGTCTCGATTCCAGTGTTGTCCAGTCGGATGCAGATACCAGCTCGAAGATTCAACCCGGGGAAAGGGAAGGAAAGAAAGTTTCGAAGGGGCGATGCAGATCTGGAAGGGACAACTCTGTGGATGCTCCGACAGAGGGCGATGAGAAGAATTACTGCATACAACATGATGTTTCTTCACGTAGTGTTCCGAAGAGCAGAACCAGAGGGGCTGCTGCTTCTAAGCATAGACAAAGATATTATTCTGGACAGGAGACGGCTGAGCGTAAACAAAGCCGTAAAAAACGGAAATTCGTAATTGGTGAGGATGTGGCTGATCCTGTAACACCAGTGAAACCGAAACCAGATTCGGACTCGTTGCAAATCGACAGAGATGAGTGGCAGTGTTCTAGTCCAAAAAAGGGAAAAACAAGTCCGAGGAAAACGTTACGTAGTTTTATCAAATTTTTTGAAGTGCTATCTCCAAAGAAAAGAGCTAGAAAGAAAACTATGCAAACTTCAAATGTGTCTGAATTACCCACTCGAGGGAGAAGAAAAAGAATCCCAAATGATGTGCATATATCAGACTCGTCAGATCCAGAAAAAAGAACATTTGGTGAAAAGAAAAAGACAAAAAGTTATTTTGGGATCTCGGAATCCTTTGTTGCTGAGAAAGGGCATCCGAGGAAGAAATTAAACAGTTGCATTGTTGATGTTCCGCAGTGTTCAAATACGTTAAAAAGAAGAAAGCGTCCAAGGAAAACTTTAGGAAAGACAACTGGTGGTTCAGTGTCAGTAAGAAAAACTATTGGTAGCAAGAAAAACCACTTGGACGTGTGTAAATCTCCCACTCACAGTGAAGTGTCTCAGTCGCTGTCCCAGGAGGACCACGATGGTGTTATTGCGCGTAAACTCCAGAAACAGTTTGACCTCGAAGTCAAGTTGAAGCTGGTAGAGGGTAGATTTAAGGGAACCGACAAACAGTACTACTTCCGTAGAGAACCAAAGTACAGCTGATGTGGCCATACAGCGGGCTGTTTAACCTCTTGAAAGACTGCTGGAAAATGTGATATCTTCTAAATATGCTATTGTATGAAATGATGTGTATAACATTAAACAAGTGAAAGCTGCTACAGGGTAAATTTAAGGGAACCAACAAACGGTACTTGTTCTATAGCAAAACCAAAGAATAGCTTATATGCTCTTTAAACTGAAAAAAAGAGAACCTGCTGGAAAATGTGATATCTGTTAAATCTGTTAAGTGGGAAATGAATGTTTATATCTGATGTTTATACAGTGCACAAATCAGCAATAAAGTCAACTAGTTGCCGGTGGTCGGCTAGATGGTTTTCAGCTTGTAGAACCAATTTTCTGTTGGTCATGTGATCAATTACAGTTAAAGTAGCAGGGCTTGAAATTAACGGGCAGCAGGCAGCAAATGCCTCTCGAAATACGTAATATGCTTTCTAATATAATTGGAATTAATTTCACAAGCACATTTTGCTTTCCATCCTATTTTGACAGCAGTCCTGCTAACAAAAGTTATACACCACAAGTCTAATTAGAAGTTTAATTCTGAGACCCTAACATTTTATTTGCTTCCAGAATAAAATTTGAGAAGCAGACATTACTTCCTATTCCATTCCAAAAAATTTTAAAAATTAATTTCGAGACTTGCAATTGTTGAATAATTTAAACAATTTGGGGTCCTCACAAGTTGCTGTTATGCTAAGGTGTTCAGAATGAGTCAGAAACAACCATGGGTTGTTAATTGACATTGGGTAATGCCAAACATAAGAAACCAACCATGGGTTGTTAGTTGACATTGGGAAATGCCAACCATGGGTTGTTAGTTGACATTGGGTAATGCCAACCATAAGAAATCAACCGTGGGTTTTTAGTTGACATTGAGTAATGCCAACCATGAGTTGTTAGTTGACATTGGGAAATGCCAACCATGGGTTGTTAGTTGAC

Transcript

ctg454-4.7-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR051657	Family	RNF168/RNF169 E3 ubiquitin-protein ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23328	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0035861	Cellular Component	site of double-strand break	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg454-4.7-1 global RNA-seq network